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GEO accession:
Sample GSM1154560
Query DataSets for GSM1154560
Status
Public on Jul 15, 2013
Title
AML-009-Tumor
Sample type
genomic
Source name
AML primary sample
Organism
Homo sapiens
Characteristics
disease status: acute myeloid leukemia
tissue: tumor
Treatment protocol
None
Growth protocol
None
Extracted molecule
genomic DNA
Extraction protocol
Genomic DNA was obtained from bone marrow or peripheral blood samples.
Label
Biotin
Label protocol
Affymetrix standard protocol.
Hybridization protocol
Affymetrix standard protocol.
Scan protocol
Affymetrix standard protocol.
Description
Hybridized to 250K_Nsp
Data processing
CEL files and CHP files (generated by Affymetrix GTYPE using the DM algorithm) were processed by CNAG/AsCNAR software.
Submission date
Jun 05, 2013
Last update date
Jul 15, 2013
Contact name
Ayana Kon
E-mail(s)
akon-tky@umin.ac.jp
Organization name
The University of Tokyo
Department
Cancer Genomics Project
Street address
Hongo 7-3-1, Bunkyo-ku
City
Tokyo
ZIP/Postal code
113-8655
Country
Japan
Platform ID
GPL3718
Series (2)
GSE47682
Affymetrix SNP array data for acute myeloid leukemia (AML) and myelodysplastic syndromes (MDS)
GSE47684
Recurrent mutations of multiple components of cohesin complex in myeloid neoplasms
Data table header descriptions
ID_REF
VALUE
Genotypes: AA, AB, BB, No Call
CONFIDENCE
RAS1
Relative allele signal for the data in the first probe group
RAS2
Relative allele signal for the data in the second probe group
P-VALUE AA
P-VALUE AB
P-VALUE BB
P-VALUE NO CALL
Data table
ID_REF
VALUE
CONFIDENCE
RAS1
RAS2
P-VALUE AA
P-VALUE AB
P-VALUE BB
P-VALUE NO CALL
AFFX-5Q-123
No Call
0
0
0
0
0
0
0
AFFX-5Q-456
No Call
0
0
0
0
0
0
0
AFFX-5Q-789
No Call
0
0
0
0
0
0
0
AFFX-5Q-ABC
No Call
0
0
0
0
0
0
0
AFFX-barcodeA
No Call
0
0
0
0
0
0
0
AFFX-barcodeB
No Call
0
0
0
0
0
0
0
AFFX-barcodeC
No Call
0
0
0
0
0
0
0
AFFX-barcodeD
No Call
0
0
0
0
0
0
0
AFFX-barcodeE
No Call
0
0
0
0
0
0
0
AFFX-barcodeF
No Call
0
0
0
0
0
0
0
AFFX-barcodeG
No Call
0
0
0
0
0
0
0
AFFX-barcodeH
No Call
0
0
0
0
0
0
0
AFFX-barcodeI
No Call
0
0
0
0
0
0
0
AFFX-barcodeJ
No Call
0
0
0
0
0
0
0
AFFX-barcodeK
No Call
0
0
0
0
0
0
0
AFFX-barcodeL
No Call
0
0
0
0
0
0
0
AFFX-barcodeM
No Call
0
0
0
0
0
0
0
AFFX-barcodeN
No Call
0
0
0
0
0
0
0
AFFX-barcodeO
No Call
0
0
0
0
0
0
0
AFFX-barcodeP
No Call
0
0
0
0
0
0
0
Total number of rows:
262338
Table truncated, full table size
20605 Kbytes
.
Supplementary file
Size
Download
File type/resource
GSM1154560_AML_p16_387_N.CEL.gz
25.2 Mb
(ftp)
(http)
CEL
GSM1154560_AML_p16_387_N.CHP.gz
508.7 Kb
(ftp)
(http)
CHP
Processed data included within Sample table
Processed data provided as supplementary file
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