NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Sample GSM1160915 Query DataSets for GSM1160915
Status Public on Sep 15, 2013
Title Mock Infected Sample Replicate 3
Sample type RNA
 
Source name A549 cells
Organism Homo sapiens
Characteristics cell line: A549
infection: A/WSN/33
Extracted molecule total RNA
Extraction protocol standard as recommended by illumina
Label Cy3
Label protocol standard as recommended by illumina
 
Hybridization protocol standard as recommended by illumina
Scan protocol standard as recommended by illumina
Description A549 cells were mock infected for 10 hours prior to RNA purification
Data processing Quantile Normalization
 
Submission date Jun 11, 2013
Last update date Sep 15, 2013
Contact name William Buggele
Organization name Northwestern University
Street address 2200 Campus Dr.
City Evanston
State/province IL
ZIP/Postal code 60208
Country USA
 
Platform ID GPL10558
Series (1)
GSE47937 Gene expression changes due to influenza virus induced miRNAs

Data table header descriptions
ID_REF
nuID nucleotide universal IDentifier (nuID), convertible to and from probe sequence. See Bioconductor lumi package for more details.
VALUE normalized signal intensity
RAW_VALUE raw signal intensity
BEAD_STDERR the standard error of the probe measurements
Detection_Pval the detection p-value of the probe
Avg_NBEADS Number of beads for the probe

Data table
ID_REF nuID VALUE RAW_VALUE BEAD_STDERR Detection_Pval Avg_NBEADS
ILMN_1762337 Ku8QhfS0n_hIOABXuE 7.13380792827794 89.11461 8.11936765312115 0.7363636 22
ILMN_2055271 fqPEquJRRlSVSfL.8A 7.18506899548638 95.76221 14.8818249042036 0.1649351 23
ILMN_1736007 ckiehnugOno9d7vf1Q 7.14827861037094 90.91748 11.0641645391948 0.587013 15
ILMN_2383229 x57Vw5B5Fbt5JUnQkI 7.19575146181004 97.36249 20.105825 0.08701298 25
ILMN_1806310 ritxUH.kuHlYqjozpE 7.20861830352697 99.5542 14.12931 0.03376623 25
ILMN_1779670 QpE5UiUgmJOJEkPXpc 7.15060566705503 91.20538 8.97091891908098 0.5506493 21
ILMN_1653355 EedxN6XeUOgPSCywB0 7.17962310613214 95.00783 18.0090634118496 0.2025974 20
ILMN_1717783 ZtOcIegchMOATSJScI 7.13204647547481 88.91138 8.00500167516984 0.7571428 13
ILMN_1705025 3l3lDoD0gssAdeehIY 7.18178132909416 95.28811 21.1977941646208 0.1909091 18
ILMN_1814316 WS4S8aGL855YVcUUZE 7.14576790218269 90.61229 12.1971759378737 0.6077922 21
ILMN_2359168 KS8aGL855YVcUUZH50 7.13257813242922 88.97443 16.1491560824255 0.7532467 29
ILMN_1731507 HA0vbfb5JI4D9_wRd4 7.10869745571417 86.11625 11.846348 0.9246753 16
ILMN_1787689 TdSfOuLunqrkiJkag8 7.16076748604159 92.48599 11.5891918726968 0.4298701 21
ILMN_3241953 Bx496XsFXiAlj.Eaeo 7.28559456051827 119.2574 19.6938331134257 0.001298701 29
ILMN_1745607 ZfoDn4IUQp4Auf56LU 7.1150323876562 86.89029 12.6685809170381 0.8922078 21
ILMN_2136495 97DZJV_gpQpKINl0Ec 7.11183327024411 86.50211 14.9485132316412 0.9116883 17
ILMN_1668111 r33p5EJWUK57ZWL3no 7.19051273242857 96.5702 16.702925 0.1181818 25
ILMN_2295559 HO95OhuhSR9JpH.qVg 7.15449078542736 91.68118 13.2895003751963 0.4987013 22
ILMN_1735045 W38p0ogk.wIBVRXllY 7.2875219514563 119.8245 14.9174827283969 0.001298701 29
ILMN_1680754 QUTgUoqmp7jyKCQRHo 7.21732019106223 101.26 17.08881 0.02077922 25

Total number of rows: 47323

Table truncated, full table size 3947 Kbytes.




Supplementary data files not provided
Processed data provided as supplementary file

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap