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Sample GSM116255 Query DataSets for GSM116255
Status Public on Mar 23, 2015
Title Fibrosarcoma induced spontaneously in C3H/He mouse, 4 days after gamma irradiation at 50Gy (g_nfsa_50_4d_2)
Sample type RNA
 
Source name Murine tumor
Organism Mus musculus
Characteristics Fibrosarcoma developed spontaneously in C3H/He mouse etablished by Dr. L. Milas from the University of Texas, M. D. Anderson Cancer Center, Huston, USA
Extracted molecule total RNA
Extraction protocol ISOGEN(Wako pure chemical)+RNeasy(QIAGEN)
Label Cy5
Label protocol CodeLink Gene Expression System: Manual Labelled cRNA Target Preparation
 
Hybridization protocol CodeLink Gene Expression System: Single-Assay Bioarray Hybridization and Detection
Scan protocol Scanning CodeLink Bioarrays on Agilent G2565 microarray scanner
Description 4days after gamma irradiation at 50Gy
Data processing global median normalization
 
Submission date Jun 26, 2006
Last update date Mar 23, 2015
Contact name Kazunori Nojiri
Organization name National Institute of Radiological Sciences
Street address 4-9-1, Anagawa, Inage-ku
City Chiba
ZIP/Postal code 263-8555
Country Japan
 
Platform ID GPL2897
Series (1)
GSE15362 Radiation-induced genes expressed in six murine tumors.

Data table header descriptions
ID_REF
Raw_intensity Raw signal intensity value
VALUE same as UNF_VALUE but with flagged values removed
Quality_flag CodeLink quality flag; G = Good signal (SNR >= 1)
Signal_strength Signal strength
Spot_mean Spot median
Spot_median Spot median
Spot_stdev Spot standard deviation
Spot_area Spot area
Spot_diameter Spot diameter
Spot_noise_level Spot noise level
Bkgd_mean Background mean
Bkgd_median Background median
Bkgd_stdev Background standard deviation
Bkgd_area Background area
UNF_VALUE Median normalized signal intensity value

Data table
ID_REF Raw_intensity VALUE Quality_flag Signal_strength Spot_mean Spot_median Spot_stdev Spot_area Spot_diameter Spot_noise_level Bkgd_mean Bkgd_median Bkgd_stdev Bkgd_area UNF_VALUE
1002 1194.7031 14.7474 G 14.3164 1268.7031 1466.0000 634.4232 130 12.8655023574829 88.6189034819013 74.4917 74.0000 9.7459 124 14.7474
1003 19.2836 0.2380 G 1.0904 92.2836 90.0000 12.3878 67 9.23618125915527 84.6364561204066 73.0769 73.0000 7.7576 188 0.2380
1004 50.6556 0.6253 G 1.4590 123.6556 123.0000 18.7677 90 10.7047443389893 84.7534154516243 72.3297 73.0000 7.8356 188 0.6253
1005 5.4545 L 0.9143 77.4545 77.0000 10.6236 88 10.5851345062256 84.7159733745472 72.7191 72.0000 8.4773 184 0.0673
1006 11.6829 L 0.9894 84.6829 85.0000 11.9234 41 7.22515201568604 85.5867649965443 73.6049 73.0000 8.3912 168 0.1442
1010 331.0574 4.0866 G 4.8626 401.0574 436.0000 130.7717 124 12.5650987625122 82.4782224802355 71.6750 70.0000 8.3188 124 4.0866
1012 632.1010 7.8026 G 8.3226 705.1010 782.0000 339.4123 99 11.2272310256958 84.7215300734549 72.2155 73.0000 7.8144 187 7.8026
1013 41.1528 0.5080 G 1.3185 114.1528 113.0000 12.3959 72 9.57461452484131 86.5754653446495 73.3536 73.0000 9.0503 187 0.5080
1017 70.3762 0.8687 G 1.6689 143.3762 147.0000 23.9380 103 11.4517974853516 85.9101972547213 72.4407 73.0000 8.6068 122 0.8687
1018 13.6596 0.1686 G 1.0049 85.6596 85.0000 9.8332 47 7.73577785491943 85.2398604825459 73.3204 72.0000 8.8266 187 0.1686
1019 70.8684 0.8748 G 1.6949 143.8684 148.0000 23.9371 76 9.83698177337646 84.8817230558708 73.3187 73.0000 7.9211 188 0.8748
1020 25.6324 0.3164 G 1.1429 98.6324 97.0000 10.4176 68 9.30485343933105 86.2992647664703 73.6209 73.0000 8.8662 188 0.3164
1024 1.9592 L 0.7217 76.9592 76.0000 9.9795 49 7.89865398406982 106.635814020904 77.4250 75.0000 21.0905 124 0.0242
1026 387.4359 4.7825 G 5.4096 459.4359 508.0000 173.9709 119 12.3091630935669 84.9296389189517 72.3698 72.0000 8.6198 123 4.7825
1027 9.2813 L 0.9687 82.2813 81.0000 9.7427 64 9.02703380584717 84.944238084288 72.9068 73.0000 7.9628 122 0.1146
1030 47.7290 0.5892 G 1.4169 120.7290 119.0000 16.2306 109 11.7806243896484 85.2080213064638 73.1341 73.0000 8.1387 84 0.5892
1031 237.4676 2.9313 G 3.6043 310.4676 338.0000 110.3411 141 13.3987598419189 86.1375995601424 72.9800 73.0000 8.7584 208 2.9313
1034 200.8571 2.4794 G 3.2211 272.8571 286.0000 74.0885 100 11.2837915420532 84.710608276126 71.8242 72.0000 8.4737 188 2.4794
1039 41.3000 0.5098 G 1.1049 116.3000 118.0000 15.3424 90 10.7047443389893 105.258703576591 77.4274 75.0000 20.1725 121 0.5098
1040 10.5088 L 0.9741 83.5088 85.0000 9.8784 57 8.51907634735107 85.73012479974 73.8868 73.0000 8.4867 110 0.1297

Total number of rows: 36227

Table truncated, full table size 4524 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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