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Sample GSM1175053 Query DataSets for GSM1175053
Status Public on Feb 07, 2014
Title Rapa-1 Male 5 [chronic]
Sample type RNA
 
Source name Rapa male liver
Organism Mus musculus
Characteristics strain: C57BL6/J
age: 25 months
gender: male
treatment group: Rapamycin
tissue: liver
Extracted molecule total RNA
Extraction protocol Total RNA was extracted from 25 mg of liver in each sample using Qiagen Rneasy kit following manufacturer’s protocol. RNA quantity was assessed by Nanodrop and RNA quality was assessed by Agilent Bioanalyzer.
Label biotin
Label protocol Biotinylated cRNA were prepared using Ambion kit- Illumina TotalPrep RNA Amplification Kit
 
Hybridization protocol Standard Illumina hybridization protocol
Scan protocol Standard Illumina scanning protocol
Description R1M 5; Rapa M348
Data processing Data was processed in matlab by log2 transformation and quantile normalization
 
Submission date Jun 26, 2013
Last update date Feb 07, 2014
Contact name Wilson Chun Yim Fok
E-mail(s) wilson.fok@wustl.edu
Organization name Washington University in St. Louis
Department Hematology
Street address 660 S Euclid Ave
City Saint Louis
State/province MO
ZIP/Postal code 63110
Country USA
 
Platform ID GPL6885
Series (2)
GSE48333 The effect of chronic Rapamycin on the transcriptome of old mouse liver
GSE48334 The effect of Rapamycin on the transcriptome of old mouse liver

Data table header descriptions
ID_REF
VALUE log2 transformation and quantile normalization

Data table
ID_REF VALUE
ILMN_2896528 10.79
ILMN_2721178 9.208
ILMN_3033922 10.772
ILMN_3092673 12.52
ILMN_2816356 6.906
ILMN_2808939 10.57
ILMN_2634564 8.783
ILMN_2737647 6.709
ILMN_2734484 8.842
ILMN_2952292 7.446
ILMN_2699078 6.409
ILMN_1213681 8.18
ILMN_2735413 9.551
ILMN_2735415 9.7
ILMN_2891688 8.8
ILMN_2637698 9.35
ILMN_2674228 7.649
ILMN_2601546 6.915
ILMN_1230831 6.635
ILMN_2848071 9.889

Total number of rows: 25697

Table truncated, full table size 475 Kbytes.




Supplementary data files not provided
Raw data are available on Series record
Processed data included within Sample table

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