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Sample GSM1263326 Query DataSets for GSM1263326
Status Public on Nov 14, 2013
Title Bach2 KO Treg
Sample type RNA
 
Source name Bach2 KO spleen
Organism Mus musculus
Characteristics genotype: Bach2 KO
genetic background: C57BL/6
cell type: CD4+ CD25+ GITR+ (Treg) cells
Extracted molecule total RNA
Extraction protocol Rneasy RNA extraction kit (Qiagen) was used.
Label biotin-16-UTP
Label protocol Labeling procedures were carred out according to the standard protocol from Illumina.
 
Hybridization protocol hybridization and wash were done according to the Illumina's manual. (Hyb:Incubation at 58c for at least 14 hours)
Scan protocol by Illumina iScan
Description Gene expression
male, Bach2 KO, 7 week old
Data processing GeneSpring
 
Submission date Nov 13, 2013
Last update date Nov 14, 2013
Contact name Eui Ho Kim
E-mail(s) ekim38@wisc.edu
Phone 608-263-4715
Organization name University of Wisconsin-Madison
Department Pathobiological Sciences
Lab Dr. M. Suresh
Street address 2015 Linden Dr.
City Madison
State/province Wisconsin
ZIP/Postal code 53706
Country USA
 
Platform ID GPL6885
Series (1)
GSE52337 mRNA expression in CD4+ CD25+ GITR+ regulatory T cells from WT and Bach2 KO mice

Data table header descriptions
ID_REF
VALUE Percentile shift normalization by GeneSpring software
Detection Pval

Data table
ID_REF VALUE Detection Pval
ILMN_2896528 2358.168 0
ILMN_2721178 388.0706 0
ILMN_3033922 450.5513 0
ILMN_3092673 3234.616 0
ILMN_2816356 103.1761 0.03884712
ILMN_2808939 1093.302 0
ILMN_2634564 488.867 0
ILMN_2737647 95.35261 0.09273183
ILMN_2734484 307.3265 0
ILMN_2952292 147.7534 0
ILMN_2699078 80.66797 0.5325814
ILMN_1213681 264.1869 0
ILMN_2735413 77.58592 0.7192982
ILMN_2735415 74.06586 0.8922306
ILMN_2891688 2364.905 0
ILMN_2637698 1131.435 0
ILMN_2674228 476.4464 0
ILMN_2601546 80.41527 0.5488722
ILMN_1230831 94.6275 0.1027569
ILMN_2848071 88.96925 0.226817

Total number of rows: 25697

Table truncated, full table size 730 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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