GEO Publications
Handout
NAR 2024 (latest)
NAR 2002 (original)
All publications
FAQ
MIAME
Email GEO
NCBI
>
GEO
>
Accession Display
Not logged in |
Login
GEO help:
Mouse over screen elements for information.
Scope:
Self
Platform
Samples
Series
Family
Format:
HTML
SOFT
MINiML
Amount:
Brief
Quick
GEO accession:
Sample GSM1274934
Query DataSets for GSM1274934
Status
Public on Feb 19, 2014
Title
liver-rep13
Sample type
genomic
Source name
liver
Organism
Homo sapiens
Characteristics
tissue: liver
Treatment protocol
N/A
Growth protocol
N/A
Extracted molecule
genomic DNA
Extraction protocol
genomic DNA was extracted and purified using Qiagen DNeasy Kit according to standard instructions
Label
Cy3 and Cy5
Label protocol
Standard Illumina Protocol
Hybridization protocol
Bisulphite converted DNA was amplified, fragmented and hybridised to Illumina HumanMethylation450 Beadchip using standard Illumina protocol
Scan protocol
Arrays were imaged using Illumina iScan using standard recommended Illumina scanner setting
Description
5771710040_R05C01
Data processing
minfi, Bioconductor, R
Submission date
Nov 25, 2013
Last update date
Feb 19, 2014
Contact name
Martin Aryee
E-mail(s)
aryee.martin@mgh.harvard.edu
Organization name
Massachusetts General Hospital
Department
Pathology
Street address
149 13th Street
City
Charlestown
State/province
MA
ZIP/Postal code
02129
Country
USA
Platform ID
GPL13534
Series (1)
GSE52731
DNA methylation profiles of liver and placenta technical replicates
Data table header descriptions
ID_REF
VALUE
minfi preprocessQuantile Beta
Data table
ID_REF
VALUE
cg13869341
0.779315331396321
cg14008030
0.62432821150682
cg12045430
0.076664135831301
cg20826792
0.263111464739255
cg00381604
0.127267855621067
cg20253340
0.443212522407708
cg21870274
0.565542562348262
cg03130891
0.110700301843793
cg24335620
0.662172410855139
cg16162899
0.803737976892382
cg17149495
0.672653710681627
cg22802167
0.844658269724624
cg24669183
0.741359759062009
cg17308840
0.283862467425339
cg17866181
0.819496762726927
cg24159721
0.17127717786901
cg15174812
0.190334511119505
cg08477687
0.222409171579527
cg00034556
0.22312345562828
cg00645010
0.0777815142680383
Total number of rows:
485512
Table truncated, full table size
13800 Kbytes
.
Supplementary data files not provided
Processed data included within Sample table
|
NLM
|
NIH
|
GEO Help
|
Disclaimer
|
Accessibility
|
