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GEO accession:
Sample GSM1274973
Query DataSets for GSM1274973
Status
Public on Feb 19, 2014
Title
liver-rep52
Sample type
genomic
Source name
liver
Organism
Homo sapiens
Characteristics
tissue: liver
Treatment protocol
N/A
Growth protocol
N/A
Extracted molecule
genomic DNA
Extraction protocol
genomic DNA was extracted and purified using Qiagen DNeasy Kit according to standard instructions
Label
Cy3 and Cy5
Label protocol
Standard Illumina Protocol
Hybridization protocol
Bisulphite converted DNA was amplified, fragmented and hybridised to Illumina HumanMethylation450 Beadchip using standard Illumina protocol
Scan protocol
Arrays were imaged using Illumina iScan using standard recommended Illumina scanner setting
Description
7512578072_R02C01
Data processing
minfi, Bioconductor, R
Submission date
Nov 25, 2013
Last update date
Feb 19, 2014
Contact name
Martin Aryee
E-mail(s)
aryee.martin@mgh.harvard.edu
Organization name
Massachusetts General Hospital
Department
Pathology
Street address
149 13th Street
City
Charlestown
State/province
MA
ZIP/Postal code
02129
Country
USA
Platform ID
GPL13534
Series (1)
GSE52731
DNA methylation profiles of liver and placenta technical replicates
Data table header descriptions
ID_REF
VALUE
minfi preprocessQuantile Beta
Data table
ID_REF
VALUE
cg13869341
0.782020961734358
cg14008030
0.623999549926577
cg12045430
0.173906390984205
cg20826792
0.359675108284367
cg00381604
0.101009252009797
cg20253340
0.438004065689531
cg21870274
0.566126649362543
cg03130891
0.0417967115465085
cg24335620
0.682900084864808
cg16162899
0.842367256637168
cg17149495
0.638258904125549
cg22802167
0.835921774581751
cg24669183
0.805348600229431
cg17308840
0.26520303213666
cg17866181
0.863115210447899
cg24159721
0.136258860049671
cg15174812
0.142846361902002
cg08477687
0.208639263456716
cg00034556
0.174854573391437
cg00645010
0.0679308378006879
Total number of rows:
485512
Table truncated, full table size
13802 Kbytes
.
Supplementary data files not provided
Processed data included within Sample table
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