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GEO accession:
Sample GSM1274976
Query DataSets for GSM1274976
Status
Public on Feb 19, 2014
Title
liver-rep55
Sample type
genomic
Source name
liver
Organism
Homo sapiens
Characteristics
tissue: liver
Treatment protocol
N/A
Growth protocol
N/A
Extracted molecule
genomic DNA
Extraction protocol
genomic DNA was extracted and purified using Qiagen DNeasy Kit according to standard instructions
Label
Cy3 and Cy5
Label protocol
Standard Illumina Protocol
Hybridization protocol
Bisulphite converted DNA was amplified, fragmented and hybridised to Illumina HumanMethylation450 Beadchip using standard Illumina protocol
Scan protocol
Arrays were imaged using Illumina iScan using standard recommended Illumina scanner setting
Description
7800246043_R04C01
Data processing
minfi, Bioconductor, R
Submission date
Nov 25, 2013
Last update date
Feb 19, 2014
Contact name
Martin Aryee
E-mail(s)
aryee.martin@mgh.harvard.edu
Organization name
Massachusetts General Hospital
Department
Pathology
Street address
149 13th Street
City
Charlestown
State/province
MA
ZIP/Postal code
02129
Country
USA
Platform ID
GPL13534
Series (1)
GSE52731
DNA methylation profiles of liver and placenta technical replicates
Data table header descriptions
ID_REF
VALUE
minfi preprocessQuantile Beta
Data table
ID_REF
VALUE
cg13869341
0.769906830091275
cg14008030
0.63577567552391
cg12045430
0.143545015147876
cg20826792
0.326970696601683
cg00381604
0.123703037997796
cg20253340
0.430074431987021
cg21870274
0.561939867013588
cg03130891
0.0677657829857905
cg24335620
0.696590669125829
cg16162899
0.845278958609702
cg17149495
0.622136999926015
cg22802167
0.840966916201491
cg24669183
0.757320829699151
cg17308840
0.262010328483737
cg17866181
0.836264690461536
cg24159721
0.124424469193598
cg15174812
0.151114123629558
cg08477687
0.299565637065637
cg00034556
0.218497391741105
cg00645010
0.0726375611557663
Total number of rows:
485512
Table truncated, full table size
13802 Kbytes
.
Supplementary data files not provided
Processed data included within Sample table
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