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Sample GSM128513 Query DataSets for GSM128513
Status Public on Sep 28, 2010
Title 1846_p_1
Sample type RNA
 
Source name biopsy, prior to treatment, chemoradiotherapy
Organism Homo sapiens
Characteristics female, cervical cancer
Extracted molecule total RNA
Extraction protocol ISOGEN(Wako pure chemical)+RNeasy(QIAGEN)
Label Cy5
Label protocol http://www4.amershambiosciences.com/APTRIX/upp00919.nsf/Content/WD%3ACodeLink+Gene+E%28270813678-B500%29?OpenDocument&hometitle=WebDocs
 
Hybridization protocol http://www4.amershambiosciences.com/APTRIX/upp00919.nsf/Content/WD%3ACodeLink+Gene+E%28270810969-B500%29?OpenDocument&hometitle=WebDocs
Scan protocol http://www4.amershambiosciences.com/APTRIX/upp00919.nsf/Content/WD%3AScanning+CodeLi%28248345081-B500%29?OpenDocument&hometitle=WebDocs
Description prior to treatment, chemoradiotherapy
Data processing global median normalization
 
Submission date Aug 15, 2006
Last update date Sep 28, 2010
Contact name Shuhei Noda
E-mail(s) s_noda@nirs.go.jp
Organization name National institute of radiological sciences
Department Frontier research center
Street address Anagawa 4-9-1
City Chiba
State/province Chiba
ZIP/Postal code 2658333
Country Japan
 
Platform ID GPL2895
Series (1)
GSE20167 Gene expression profiles of cervical cancers for novel molecular classification

Data table header descriptions
ID_REF
Array Logical array
Raw_intensity Raw signal intensity value
VALUE Median normalized signal intensity value
Quality_flag CodeLink quality flag
Signal_strength Signal strength
Spot_mean Spot median
Spot_median Spot median
Spot_stdev Spot standard deviation
Spot_area Spot area
Spot_diameter Spot diameter
Spot_noise_level Spot noise level
Bkgd_mean Background mean
Bkgd_median Background median
Bkgd_stdev Background standard deviation
Bkgd_area Background area

Data table
ID_REF Array Raw_intensity VALUE Quality_flag Signal_strength Spot_mean Spot_median Spot_stdev Spot_area Spot_diameter Spot_noise_level Bkgd_mean Bkgd_median Bkgd_stdev Bkgd_area
1001 1 13635.6543 126.8734 G 142.0035 13718.6543 6115.0000 14489.7412 167 14.5818719863892 96.6078746317027 82.8167 83.0000 9.0719 124
1002 1 919.6737 8.5571 G 10.0993 1004.6737 1118.0000 500.4785 95 10.9980792999268 99.4798825705414 85.1703 85.0000 9.6533 188
1003 1 5.2022 0.0484 L 0.8956 86.2022 86.0000 11.0455 89 10.6451082229614 96.2519535456391 82.2634 81.0000 10.1680 192
1004 1 7.0597 0.0657 L 0.9371 87.0597 85.0000 12.9878 67 9.23618125915527 92.9042058153851 80.4083 80.0000 8.6028 124
1005 1 14.4595 0.1345 G 1.0180 94.4595 94.0000 14.2632 37 6.86366271972656 92.7910322914655 80.5114 80.0000 8.5274 182
1006 1 27.3455 0.2544 G 1.1419 108.3455 107.0000 11.2431 55 8.36828422546387 94.8829663590333 82.4176 81.0000 9.2553 188
1007 1 17.9333 0.1669 G 1.0407 97.9333 99.0000 10.7283 60 8.74038791656494 94.1044644285932 80.8462 80.0000 9.4030 188
1008 1 11617.6387 108.0967 G 124.7514 11697.6387 5314.0000 12065.3623 168 14.6254653930664 93.76762591116 80.7000 80.0000 9.1784 124
1009 1 303.9885 2.8285 G 4.0342 383.9885 408.0000 136.5230 87 10.5248203277588 95.1828969121552 80.3352 80.0000 10.1219 188
1010 1 494.2069 4.5984 G 6.1978 573.2069 628.0000 252.3354 87 10.5248203277588 92.4854640883723 79.5824 79.0000 8.9903 188
1011 1 67.3026 0.6262 G 1.4890 148.3026 146.0000 23.5797 76 9.83698177337646 99.5988520036456 81.1978 81.0000 12.3992 188
1012 1 50.5714 0.4705 G 1.3326 132.5714 133.0000 20.1618 63 8.95623207092285 99.4798507385917 82.0659 82.0000 11.6532 188
1013 1 42.4133 0.3946 G 1.3119 122.4133 120.0000 16.9021 75 9.77204990386963 93.3092414707037 80.0604 80.0000 8.8728 188
1014 1 13.9048 0.1294 L 0.9963 94.9048 97.0000 11.1415 42 7.3127326965332 95.2601221803893 81.6209 81.0000 9.5067 188
1015 1 15860.3740 147.5733 G 163.9420 15943.3740 9975.0000 15958.8027 189 15.5126485824585 97.2501058953187 83.2731 83.0000 9.5001 235
1016 1 62.4744 0.5813 G 1.4973 146.4744 146.0000 19.6127 78 9.96557521820068 97.8260116185882 84.6264 84.0000 9.2173 188
1017 1 30.3684 0.2826 G 1.1566 114.3684 113.0000 16.3481 76 9.83698177337646 98.8834620595145 84.3256 84.0000 9.9223 178
1018 1 21.5333 0.2004 G 1.0721 106.5333 104.0000 18.3007 45 7.56939744949341 99.3653882995715 84.9419 85.0000 9.5769 178
1019 1 23.0000 0.2140 G 1.0651 111.0000 110.0000 16.8536 46 7.65303993225098 104.2161076079 88.4341 88.0000 10.8107 188
1020 1 22.2609 0.2071 G 1.0475 109.2609 109.0000 13.0907 46 7.65303993225098 104.304124201741 87.6923 87.0000 11.5361 188

Total number of rows: 54359

Table truncated, full table size 6579 Kbytes.




Supplementary file Size Download File type/resource
GSM128513.TXT.gz 2.6 Mb (ftp)(http) TXT
Processed data included within Sample table
Processed data provided as supplementary file
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