|
| Status |
Public on Feb 13, 2014 |
| Title |
Degroot_4_Plate209 |
| Sample type |
RNA |
| |
|
| Source name |
Surgical Case
|
| Organism |
Homo sapiens |
| Characteristics |
cell type: Astrocytoma
grade: GradeIII
Sex: M
age: 56
|
| Treatment protocol |
De novo, non-treated.
|
| Growth protocol |
Clinical samples
|
| Extracted molecule |
total RNA |
| Extraction protocol |
standard TriZol method (Invitrogen)
|
| Label |
Cy3
|
| Label protocol |
Refer to the Illumina whole genome DASL array Manual
|
| |
|
| Hybridization protocol |
Refer to the Illumina whole genome DASL array Manual
|
| Scan protocol |
Refer to the Illumina whole genome DASL array Manual
|
| Description |
Anaplastic astrocytoma
|
| Data processing |
Raw data was transformed to log2 scale and normalized by quantile method using Bioconductor package beadarray. For genes with multiple probes, the probe with maximum value was used to represent the gene.
|
| |
|
| Submission date |
Feb 12, 2014 |
| Last update date |
Feb 13, 2014 |
| Contact name |
Roel G.W. Verhaak |
| E-mail(s) |
rverhaak@mdanderson.org
|
| Organization name |
UT MD Anderson Cancer Center
|
| Street address |
1400 Pressler street
|
| City |
Houston |
| State/province |
TX |
| ZIP/Postal code |
77030 |
| Country |
USA |
| |
|
| Platform ID |
GPL18281 |
| Series (1) |
| GSE54004 |
Gene expression data from malignant gliomas |
|
