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Sample GSM1326978 Query DataSets for GSM1326978
Status Public on Feb 13, 2014
Title Degroot_94_Plate209
Sample type RNA
 
Source name Surgical Case
Organism Homo sapiens
Characteristics cell type: NotDefined
grade: NotDefined
Sex: M
age: 53
Treatment protocol De novo, non-treated.
Growth protocol Clinical samples
Extracted molecule total RNA
Extraction protocol standard TriZol method (Invitrogen)
Label Cy3
Label protocol Refer to the Illumina whole genome DASL array Manual
 
Hybridization protocol Refer to the Illumina whole genome DASL array Manual
Scan protocol Refer to the Illumina whole genome DASL array Manual
Description Glioma, NOS
Data processing Raw data was transformed to log2 scale and normalized by quantile method using Bioconductor package beadarray. For genes with multiple probes, the probe with maximum value was used to represent the gene.
 
Submission date Feb 12, 2014
Last update date Feb 13, 2014
Contact name Roel G.W. Verhaak
E-mail(s) rverhaak@mdanderson.org
Organization name UT MD Anderson Cancer Center
Street address 1400 Pressler street
City Houston
State/province TX
ZIP/Postal code 77030
Country USA
 
Platform ID GPL18281
Series (1)
GSE54004 Gene expression data from malignant gliomas

Data table header descriptions
ID_REF
VALUE Normalized signal intensity

Data table
ID_REF VALUE
7A5 5.727412989
A1BG 5.980137919
A1CF 5.575876559
A26C3 5.320502239
A2BP1 7.412254041
A2LD1 6.959105224
A2M 13.26973322
A2ML1 7.590839013
A3GALT2 5.684334232
A4GALT 7.805826509
A4GNT 5.853346888
AAA1 5.822277874
AAAS 9.251089432
AACS 8.815835573
AADAC 5.981503998
AADACL1 7.675952666
AADACL2 5.529923693
AADACL4 5.466195285
AADAT 8.262056641
AAGAB 12.5673511

Total number of rows: 20818

Table truncated, full table size 378 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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