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Sample GSM1337326 Query DataSets for GSM1337326
Status Public on Mar 05, 2014
Title Rheumatoid arthritis, synovial membrane patient EB_141 (U133A)
Sample type RNA
 
Source name synovial membrane patient EB_141 (rheumatoid arthritis)
Organism Homo sapiens
Characteristics gender: female
age: 73
clinical status: rheumatoid arthritis
Treatment protocol NSAID, prednisolone, Tilidin
Extracted molecule total RNA
Extraction protocol according RNeasy Kit, Qiagen
Label biotin
Label protocol according to supplier instructions, Affymetrix
 
Hybridization protocol according to supplier instructions, Affymetrix
Scan protocol by laser scanning (Hewlett Packard gene scanner)
Description see publication for details
EB_141
Data processing background corrected signal intensities were determined using the MAS 5.0 software (Affymetrix)
MAS5.0 signal intensity, ABS_CALL: presence/absence call, DETECTION P-VALUE: significance of 0-hypothesis (not expressed)
 
Submission date Feb 28, 2014
Last update date Mar 05, 2014
Contact name Raimund W Kinne
E-mail(s) raimund.w.kinne@med.uni-jena.de
Phone +49 36691 81228
Organization name Jena University Hospital
Department Department of Orthopedics
Lab Experimental Rheumatology Unit, Waldkrankenhaus Rudolf Elle
Street address Klosterlausnitzer Str. 81
City Eisenberg
ZIP/Postal code 07607
Country Germany
 
Platform ID GPL96
Series (1)
GSE55457 Identification of rheumatoid arthritis and osteoarthritis patients by transcriptome-based rule set generation [Jena]

Data table header descriptions
ID_REF
VALUE MAS5.0 signal intensity
ABS_CALL
DETECTION P-VALUE

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
1007_s_at 518.9 P 0.001354
1053_at 86 A 0.138765
117_at 681.6 P 0.000388
121_at 1122.6 P 0.002617
1255_g_at 46.9 A 0.302547
1294_at 706.4 P 0.000266
1316_at 134.3 P 0.00418
1320_at 42.1 A 0.5
1405_i_at 890.5 P 0.001165
1431_at 64.9 P 0.02786
1438_at 231.5 P 0.024711
1487_at 574.1 P 0.043968
1494_f_at 204.8 P 0.014937
1598_g_at 6091.1 P 0.000219
160020_at 1655.6 P 0.003067
1729_at 758.9 P 0.001892
177_at 197.1 P 0.005643
1773_at 169.3 M 0.060419
179_at 524.3 A 0.098054
1861_at 227.4 P 0.006532

Total number of rows: 22283

Table truncated, full table size 594 Kbytes.




Supplementary file Size Download File type/resource
GSM1337326_EB_141.CEL.gz 2.4 Mb (ftp)(http) CEL
Raw data provided as supplementary file
Processed data included within Sample table

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