|
| Status |
Public on Jul 01, 2014 |
| Title |
2-RP |
| Sample type |
genomic |
| |
|
| Source name |
prostate
|
| Organism |
Homo sapiens |
| Characteristics |
malignacy type: Bladder carcinoma
carcinoma percentage: 0%
paired sample status: --
|
| Extracted molecule |
genomic DNA |
| Extraction protocol |
DNA was extracted with QIAamp DNA Mini Kit in accordance with the prescribed protocol provided with the kit.
|
| Label |
biotin
|
| Label protocol |
Standard Illumina labeling protocol
|
| |
|
| Hybridization protocol |
Standard Illumina hybridization protocol
|
| Scan protocol |
Standard Illumina scanning protocol
|
| Description |
control
|
| Data processing |
normalized with BMIQ, version 1.1 (PMID: 23175756), R 3.0.2
unmethylated/methylated signal intensities are unavailable because they were not supplied to submitter by the service provider that performed the measurements
|
| |
|
| Submission date |
Mar 05, 2014 |
| Last update date |
Jul 01, 2014 |
| Contact name |
Krzysztof Goryca |
| Organization name |
Uniwersytet Warszawski
|
| Department |
CeNT
|
| Street address |
Banacha 2c
|
| City |
Warszawa |
| ZIP/Postal code |
02-097 |
| Country |
Poland |
| |
|
| Platform ID |
GPL13534 |
| Series (2) |
| GSE55598 |
DNA methylation sensitivity at detecting cancer in prostate core biopsies [DNA Methylation Profiles] |
| GSE55599 |
DNA methylation status is more sensitive than gene expression at detecting cancer in prostate core biopsies |
|
