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Sample GSM1346066 Query DataSets for GSM1346066
Status Public on Mar 09, 2017
Title PDGFRb-TK early pericyte ablation control
Sample type RNA
Source name 4T1 breast tumor
Organism Mus musculus
Characteristics treatment: early pericyte ablation control
pdgfrb tk: Positive
tissue: 4T1 breast tumor
genotype: PDGFRb-TK
Extracted molecule total RNA
Extraction protocol RNA was extracted with Trizol reagent, followed by clean-up with QIAGEN RNeasy mini kit in accordance with the prescribed protocol provided with the kit. Quality control was performed with Agilent Bioanalyser.
Label biotin
Label protocol Biotinylated cRNA were prepared with the Ambion MessageAmp kit for Illumina arrays
Hybridization protocol Standard Illumina hybridization protocol
Scan protocol Standard Illumina scanning protocol
Description WT Early
GCV injected
Data processing GenomeStudio
Submission date Mar 11, 2014
Last update date Mar 09, 2017
Contact name Valerie LeBleu
Organization name MDACC
Street address 1881 East Road
City Houston
State/province TX
ZIP/Postal code 77054
Country USA
Platform ID GPL6885
Series (1)
GSE55785 Gene Expression Analysis of 4T1 orthotopic tumors in PDGFRb-TK mice

Data table header descriptions
VALUE Rank Invariant Background Subtracted
Detection Pval

Data table
ID_REF VALUE Detection Pval
ILMN_2896528 2564.3 0
ILMN_2721178 533.3 0
ILMN_3033922 373.5 0
ILMN_3092673 2261.2 0
ILMN_2816356 12.6 0.83459
ILMN_2808939 482.4 0
ILMN_2634564 450.9 0
ILMN_2737647 24.8 0.15664
ILMN_2734484 130.5 0
ILMN_2952292 143.6 0
ILMN_2699078 14.8 0.72556
ILMN_1213681 141.3 0
ILMN_2735413 14 0.76942
ILMN_2735415 26.2 0.11779
ILMN_2891688 179.8 0
ILMN_2637698 924.6 0
ILMN_2674228 228.2 0
ILMN_2601546 28.6 0.06767
ILMN_1230831 16.6 0.60777
ILMN_2848071 34.9 0.0213

Total number of rows: 25697

Table truncated, full table size 606 Kbytes.

Supplementary data files not provided
Raw data are available on Series record
Processed data included within Sample table

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