|
Status |
Public on Oct 05, 2014 |
Title |
LU411 |
Sample type |
genomic |
|
|
Source name |
Lung tumor
|
Organism |
Homo sapiens |
Characteristics |
disease state: lung carcinomas
|
Extracted molecule |
genomic DNA |
Extraction protocol |
Genomic DNA from fresh frozen lung tumor/normal tissue was extracted using Allprep (Qiagen).
|
Label |
Cy3, Cy5
|
Label protocol |
Standard Illumina labelling protocol.
|
|
|
Hybridization protocol |
Bisulfite-converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450 BeadChips using the standard Illumina protocol.
|
Scan protocol |
Arrays were imaged using High Scan SQ using the standard recommended Illumina scanner setting.
|
Data processing |
Signal intensities were obtained from GenomeStudio (Illumina), converted to beta-values, filtered, and normalized to remove biases between Infinium I and II probes
|
|
|
Submission date |
Mar 19, 2014 |
Last update date |
Oct 05, 2014 |
Contact name |
Johan Staaf |
Organization name |
SCIBLU - Swegene Centre for Integrative Biology at Lund University
|
Street address |
Medicon Village
|
City |
Lund |
ZIP/Postal code |
SE-223 81 |
Country |
Sweden |
|
|
Platform ID |
GPL13534 |
Series (2) |
GSE56044 |
Genome-wide DNA methylation analysis of lung carcinoma |
GSE60645 |
Genome-wide DNA methylation and expression analysis of lung carcinoma |
|