|
Status |
Public on May 27, 2014 |
Title |
Hepatocytes_Microcystin-LR_.07 uM_1 d_Rep3_93468.CEL |
Sample type |
RNA |
|
|
Source name |
Hepatocytes
|
Organism |
Rattus norvegicus |
Characteristics |
tissue: Primary rat hepatocytes compound: Microcystin-LR dose: 0.07 uM time: 1 d vehicle: DMSO rna extraction date: 38685 hybridization date: 38698
|
Extracted molecule |
polyA RNA |
Extraction protocol |
Poly A(+) RNA was isolated using the MagNA Pure LC robot (Roche, Basel, Switzerland) in combination with the MagNA Pure LC mRNA Isolation kit I (Roche, Basel, Switzerland), concentrated by ethanol precipitation, resuspend in 7 ul DEPC-treated water, quantified by ribogreen fluorescence using Wallac Victor2 fluorometer (Perkin Elmer, Fremont CA) and transcribed to cDNA
|
Label |
Biotin
|
Label protocol |
Standard Affymetrix procedures
|
|
|
Hybridization protocol |
Standard Affymetrix procedures
|
Scan protocol |
Standard Affymetrix procedures
|
Description |
Complete Drug Matrix dataset for primary rat hepatocytes; more details can be found at http://cebs.niehs.nih.gov/ under accession number 004-00008-0000-000-2
|
Data processing |
Normalized expression of probe level data was calculated using the Robust Multiarray Average function (RMA)
|
|
|
Submission date |
May 19, 2014 |
Last update date |
Aug 31, 2022 |
Contact name |
Scott Auerbach |
E-mail(s) |
AuerbachS@niehs.nih.gov
|
Organization name |
Division of the National Toxicology Program at NIEHS
|
Street address |
111 TW Alexander Drive
|
City |
Durham |
State/province |
North Carolina |
ZIP/Postal code |
27709 |
Country |
USA |
|
|
Platform ID |
GPL1355 |
Series (2) |
GSE57805 |
In vitro exposure of rat hepatocytes to a variety of toxicants, assayed by Affymetrix microarray |
GSE57822 |
Drug Matrix Data - Affymetrix Arrays |
|