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Sample GSM139784 Query DataSets for GSM139784
Status Public on Oct 21, 2006
Title NRMRL test replicate05, EPA2 batch051905
Sample type RNA
 
Source name neonatal small intestinal tissue, 5 hour infection
Organism Mus musculus
Characteristics Swiss Webster neonate, 5 days old
Extracted molecule total RNA
Extraction protocol TriZol procedure
Label Streptavidin Phycoerythrin (SAPE)
Label protocol Affymetrix SOP, EukGE-WS2
 
Hybridization protocol MAS 5.0 software EukGE-WS1
Scan protocol MAS 5.0 with model 4500 scanner
Description None
Data processing GCOS software, target signal scaling 500; normalization 1; Alpha1 0.05; Alpha2 0.065; Tau 0.015; Gamma1L and 1H 0.0045; Gamma 2L and 2H 0.06; and Pertubation 1.1.
 
Submission date Oct 12, 2006
Last update date Aug 28, 2018
Contact name Samuel Hayes
E-mail(s) hayes.sam@epa.gov
Phone 513-569-7514
Organization name United States Environmental Protection Agency
Department MS-387
Lab NRMRL/WSWRD
Street address 26 W. Martin Luther King Dr.
City Cincinnati
State/province OH
ZIP/Postal code 45268
Country USA
 
Platform ID GPL1261
Series (1)
GSE6065 Murine host cell response to Aeromonas infection
Relations
Reanalyzed by GSE119085

Data table header descriptions
ID_REF
EPA05020_60837_M430-2_EPA0209N_Stat Pairs total probe sets
EPA05020_60837_M430-2_EPA0209N_Stat Pairs Used probe sets used
VALUE normalized intensity value
ABS_CALL present, absent marginal call
DETECTION P-VALUE Detection p-value

Data table
ID_REF EPA05020_60837_M430-2_EPA0209N_Stat Pairs EPA05020_60837_M430-2_EPA0209N_Stat Pairs Used VALUE ABS_CALL DETECTION P-VALUE
AFFX-BioB-5_at 20 20 211.1 P 0.009337
AFFX-BioB-M_at 20 20 247.8 P 0.001248
AFFX-BioB-3_at 20 20 135.5 P 0.003595
AFFX-BioC-5_at 20 20 656.3 P 0.000095
AFFX-BioC-3_at 20 20 777.3 P 0.000070
AFFX-BioDn-5_at 20 20 893.9 P 0.000052
AFFX-BioDn-3_at 20 20 3444.7 P 0.000297
AFFX-CreX-5_at 20 20 10010.6 P 0.000052
AFFX-CreX-3_at 20 20 12300.4 P 0.000044
AFFX-DapX-5_at 20 20 5.9 A 0.631573
AFFX-DapX-M_at 20 20 6.3 A 0.544588
AFFX-DapX-3_at 20 20 33.9 A 0.617401
AFFX-LysX-5_at 20 20 3.4 A 0.749204
AFFX-LysX-M_at 20 20 10.2 A 0.712257
AFFX-LysX-3_at 20 20 34.0 A 0.156732
AFFX-PheX-5_at 20 20 3.9 A 0.945787
AFFX-PheX-M_at 20 20 1.6 A 0.981719
AFFX-PheX-3_at 20 20 16.2 A 0.645547
AFFX-ThrX-5_at 20 20 13.1 A 0.645547
AFFX-ThrX-M_at 20 20 4.0 A 0.712274

Total number of rows: 45101

Table truncated, full table size 1501 Kbytes.




Supplementary file Size Download File type/resource
GSM139784.CEL.gz 6.4 Mb (ftp)(http) CEL
Raw data provided as supplementary file

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