|
| Status |
Public on Dec 01, 2014 |
| Title |
56_DNA_methylation |
| Sample type |
genomic |
| |
|
| Source name |
breast tumor tissue_AC_lymph node metastasis
|
| Organism |
Homo sapiens |
| Characteristics |
tissue: breast tumor
unique patient id: AC
sample type: lymph node metastasis
|
| Extracted molecule |
genomic DNA |
| Extraction protocol |
Genomic DNA was extracted from snap-frozen tissue sections using DNeasy Tissue kit (Qiagen)
|
| Label |
biotin
|
| Label protocol |
biotin
|
| |
|
| Hybridization protocol |
strandard Illumina protocol
|
| Scan protocol |
arrays were imagined using BeadArray Reader using strandard recommended Illumina scanner settings
|
| Data processing |
data were analyzed using Partek software (version 6.5)
Processed data are presented as Average Beta. Raw data (unmethylated_and_methylated_signals.txt) are available on the series level where the Unmethylated (Signal_A) and methylated (Signal_B) signal intensities are provided.
|
| |
|
| Submission date |
Jul 01, 2014 |
| Last update date |
Dec 01, 2014 |
| Contact name |
Marsha Reyngold |
| Organization name |
Memorial Sloan-Kettering Cancer Center
|
| Department |
Radiation Oncology
|
| Lab |
Timothy Chan
|
| Street address |
1275 York Ave
|
| City |
New York |
| State/province |
NY |
| ZIP/Postal code |
10065 |
| Country |
USA |
| |
|
| Platform ID |
GPL13534 |
| Series (2) |
| GSE58999 |
Methylome remodeling in regional breast cancer metastasis [DNA methylation] |
| GSE59000 |
Methylome remodeling in regional breast cancer metastasis |
|
