|
Status |
Public on Dec 01, 2014 |
Title |
89_DNA_methylation |
Sample type |
genomic |
|
|
Source name |
breast tumor tissue_AU_primary tumor
|
Organism |
Homo sapiens |
Characteristics |
tissue: breast tumor unique patient id: AU sample type: primary tumor
|
Extracted molecule |
genomic DNA |
Extraction protocol |
Genomic DNA was extracted from snap-frozen tissue sections using DNeasy Tissue kit (Qiagen)
|
Label |
biotin
|
Label protocol |
biotin
|
|
|
Hybridization protocol |
strandard Illumina protocol
|
Scan protocol |
arrays were imagined using BeadArray Reader using strandard recommended Illumina scanner settings
|
Data processing |
data were analyzed using Partek software (version 6.5) Processed data are presented as Average Beta. Raw data (unmethylated_and_methylated_signals.txt) are available on the series level where the Unmethylated (Signal_A) and methylated (Signal_B) signal intensities are provided.
|
|
|
Submission date |
Jul 01, 2014 |
Last update date |
Dec 01, 2014 |
Contact name |
Marsha Reyngold |
Organization name |
Memorial Sloan-Kettering Cancer Center
|
Department |
Radiation Oncology
|
Lab |
Timothy Chan
|
Street address |
1275 York Ave
|
City |
New York |
State/province |
NY |
ZIP/Postal code |
10065 |
Country |
USA |
|
|
Platform ID |
GPL13534 |
Series (2) |
GSE58999 |
Methylome remodeling in regional breast cancer metastasis [DNA methylation] |
GSE59000 |
Methylome remodeling in regional breast cancer metastasis |
|