|
| Status |
Public on Jul 29, 2015 |
| Title |
9374342135_R01C01 Normal 1 |
| Sample type |
genomic |
| |
|
| Source name |
oral cavity
|
| Organism |
Homo sapiens |
| Characteristics |
sample type: genomic
disease state: Normal
|
| Extracted molecule |
genomic DNA |
| Extraction protocol |
genomic DNA was extracted and purified from oral samples using Qiagen DNeasy Kit according to standard instructions
|
| Label |
Cy5 and Cy3
|
| Label protocol |
Standard Illumina Protocol
|
| |
|
| Hybridization protocol |
bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450 Beadchip using standard Illumina protocol
|
| Scan protocol |
Arrays were imaged using BeadArray Reader using standard recommended Illumina scanner setting
|
| Description |
normal oral cavity
|
| Data processing |
GenomeStudio Software 2011.1
|
| |
|
| Submission date |
Jul 30, 2014 |
| Last update date |
Jul 29, 2015 |
| Contact name |
Daniel De Carvalho |
| E-mail(s) |
ddecarv@uhnresearch.ca
|
| Organization name |
Princess Margaret Cancer Centre
|
| Street address |
101 College St
|
| City |
Toronto |
| State/province |
ON |
| ZIP/Postal code |
M5G 1L7 |
| Country |
Canada |
| |
|
| Platform ID |
GPL13534 |
| Series (2) |
| GSE59932 |
DNA methylation data from 12 normal and 10 chronic periodontitis patients from site OCI |
| GSE59962 |
DNA methylation data from normal and chronic periodontitis patients from site OCI and USC |
|
