|
Status |
Public on Oct 22, 2014 |
Title |
SEQC_NB260 [2] |
Sample type |
SRA |
|
|
Source name |
neuroblastoma
|
Organism |
Homo sapiens |
Characteristics |
training/validation: Validation Sex: F age: 710 efs day: 1792 efs bin: 0 os day: 1792 os bin: 0 high risk: HR a_efs_all: 0 b_os_all: 0 c_sex_all: 1 e_efs_hr: 0 f_os_hr: 0 tissue: neuroblastoma
|
Extracted molecule |
total RNA |
Extraction protocol |
Illumina libraries were prepared using standard Illumina TruSeq RNA-Seq protocols
|
|
|
Library strategy |
RNA-Seq |
Library source |
transcriptomic |
Library selection |
cDNA |
Instrument model |
Illumina HiSeq 2000 |
|
|
Data processing |
Illumina Casava1.8 software used for Illumina basecalling. Reads were aligned with Novoalign and quantified with in-house program Genome_build: hg19 Supplementary_files_format_and_content: tab-delimited text files include log2 RPM for each transcript
|
|
|
Submission date |
Oct 21, 2014 |
Last update date |
Feb 27, 2017 |
Contact name |
Leming Shi |
E-mail(s) |
lemingshi@fudan.edu.cn
|
Phone |
+86-18616827008
|
Organization name |
Fudan University
|
Department |
School of Life Sciences
|
Lab |
Center for Pharmacogenomics
|
Street address |
2005 Songhu Road
|
City |
Shanghai |
ZIP/Postal code |
200438 |
Country |
China |
|
|
Platform ID |
GPL11154 |
Series (2) |
GSE47774 |
A comprehensive assessment of RNA-seq accuracy, reproducibility and information content by the Sequence Quality Control consortium |
GSE62564 |
An Investigation of Biomarkers Derived from Legacy Microarray Data for Their Utility in the RNA-Seq Era |
|
Relations |
BioSample |
SAMN03122221 |