NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Sample GSM153446 Query DataSets for GSM153446
Status Public on Dec 30, 2006
Title Parkinson's disease sample x115
Sample type RNA
 
Source name whole blood
Organism Homo sapiens
Characteristics Parkinson's disease
Extracted molecule total RNA
Extraction protocol Venous blood was collected in PAXgene (PreAnalytiX) tubes and immediately incubated at room temperature for 24 hours. RNA was then extracted following the PAXgene procedure including DNase treatment.
Label biotin
Label protocol Approximately 4 µg of total RNA was processed to produce biotinylated cRNA targets.
 
Hybridization protocol standard Affymetrix procedures
Scan protocol standard Affymetrix procedures
Description Whole blood from a patient with Parkinson's disease
Data processing Affymetrix Microarray Suite version 5.0
 
Submission date Dec 26, 2006
Last update date Jan 11, 2007
Contact name Aron C Eklund
Organization name Technical University of Denmark
Department Center for Biological Sequence Analysis
Street address Kemitorvet, Building 208
City Lyngby
ZIP/Postal code 2800
Country Denmark
 
Platform ID GPL96
Series (1)
GSE6613 Parkinson's disease vs. controls, whole blood

Data table header descriptions
ID_REF
VALUE MAS5-calculated Signal intensity

Data table
ID_REF VALUE
AFFX-BioB-5_at 292.5
AFFX-BioB-M_at 727
AFFX-BioB-3_at 266.1
AFFX-BioC-5_at 810.6
AFFX-BioC-3_at 673.4
AFFX-BioDn-5_at 468
AFFX-BioDn-3_at 3456.8
AFFX-CreX-5_at 8420.7
AFFX-CreX-3_at 15222.8
AFFX-DapX-5_at 21.4
AFFX-DapX-M_at 18.7
AFFX-DapX-3_at 1.2
AFFX-LysX-5_at 1.8
AFFX-LysX-M_at 6
AFFX-LysX-3_at 4.5
AFFX-PheX-5_at 1.7
AFFX-PheX-M_at 1.6
AFFX-PheX-3_at 12.6
AFFX-ThrX-5_at 3.3
AFFX-ThrX-M_at 22.1

Total number of rows: 22283

Table truncated, full table size 344 Kbytes.




Supplementary file Size Download File type/resource
GSM153446.CEL.gz 3.1 Mb (ftp)(http) CEL

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap