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Sample GSM157696 Query DataSets for GSM157696
Status Public on Jun 09, 2008
Title Fibrosarcoma induced spontaneously in C3H/He mouse, 3 days after carbon-ion irradiation at 30Gy (c_nfsa_30_d3_2)
Sample type RNA
 
Source name Murine tumor
Organism Mus musculus
Characteristics Fibrosarcoma developed spontaneously in C3H/He mouse etablished by Dr. L. Milas from the University of Texas, M. D. Anderson Cancer Center, Huston, USA
Extracted molecule total RNA
Extraction protocol ISOGEN(Wako pure chemical)+RNeasy(QIAGEN)
Label Cy5
Label protocol CodeLink Gene Expression System: Manual Labelled cRNA Target Preparation
 
Hybridization protocol CodeLink Gene Expression System: Single-Assay Bioarray Hybridization and Detection
Scan protocol Scanning CodeLink Bioarrays on Agilent G2565 microarray scanner
Description 3days after carbon-ion irradiation at 30Gy
Data processing global median normalization
 
Submission date Jan 23, 2007
Last update date Jun 02, 2008
Contact name Kazunori Nojiri
Organization name National Institute of Radiological Sciences
Street address 4-9-1, Anagawa, Inage-ku
City Chiba
ZIP/Postal code 263-8555
Country Japan
 
Platform ID GPL2897
Series (1)
GSE11629 Gene expression profiles of four murine tumors after carbon-ion (C-ion) or gamma irradiation.

Data table header descriptions
ID_REF
Raw_intensity Raw signal intensity value
VALUE same as UNF_VALUE but with flagged values removed
Quality_flag CodeLink quality flag
Signal_strength Signal strength
Spot_mean Spot median
Spot_median Spot median
Spot_stdev Spot standard deviation
Spot_area Spot area
Spot_diameter Spot diameter
Spot_noise_level Spot noise level
Bkgd_mean Background mean
Bkgd_median Background median
Bkgd_stdev Background standard deviation
Bkgd_area Background area
UNF_VALUE Median normalized signal intensity value

Data table
ID_REF Raw_intensity VALUE Quality_flag Signal_strength Spot_mean Spot_median Spot_stdev Spot_area Spot_diameter Spot_noise_level Bkgd_mean Bkgd_median Bkgd_stdev Bkgd_area UNF_VALUE
1001 17345.4883 124.7767 G 169.8672 17423.4883 4388.0000 20306.5977 180 15.1387948989868 102.571241319045 80.7917 78.0000 16.3808 124 124.7767
1002 1934.8055 13.9182 G 22.5151 2009.8055 2526.0000 1251.4850 110 11.8345403671265 89.2648200771374 75.8462 75.0000 9.5099 188 13.9182
1003 29.3175 0.2109 G 1.0959 105.3175 104.0000 12.4732 63 8.95623207092285 96.0969659631039 77.0714 76.0000 13.3980 188 0.2109
1004 77.0617 0.5544 G 1.7033 152.0617 154.0000 26.9688 81 10.1554126739502 89.2767792821876 75.4670 75.0000 9.5179 188 0.5544
1005 16.4167 0.1181 G 1.0377 91.4167 91.0000 16.2338 48 7.81764030456543 88.0972313297071 75.2033 75.0000 8.7315 188 0.1181
1006 24.7368 0.1779 G 1.1056 100.7368 99.0000 24.1171 57 8.51907634735107 91.113632263971 76.7348 76.0000 10.0758 187 0.1779
1007 16293.0000 117.2055 G 179.4379 16371.0000 2957.0000 20353.4453 196 15.7973079681396 91.2349002431451 77.5000 78.0000 8.8233 124 117.2055
1008 15448.0537 111.1273 G 170.4086 15527.0537 3071.0000 19462.3770 170 14.7122640609741 91.1165923763644 78.5167 79.0000 8.0777 124 111.1273
1010 547.8461 3.9410 G 6.9818 622.8461 712.0000 276.4899 91 10.7640514373779 89.2097076220375 76.2599 75.0000 9.4731 183 3.9410
1012 967.2581 6.9581 G 11.2869 1043.2581 1206.0000 577.7717 93 10.8816947937012 92.4310281413346 77.8571 76.0000 10.9540 188 6.9581
1013 58.1250 0.4181 G 1.3985 135.1250 134.0000 22.2229 64 9.02703380584717 96.6179480961499 79.0659 77.0000 13.0786 188 0.4181
1014 15165.8535 109.0973 G 165.7062 15243.8535 2367.0000 19311.8984 173 14.8415107727051 91.9932812257849 78.1500 78.0000 9.3289 124 109.0973
1015 14864.2207 106.9275 G 156.9431 14944.2207 1620.0000 19687.4297 179 15.0966844558716 95.2206290397585 80.1083 80.0000 10.1471 124 106.9275
1017 192.0488 1.3815 G 2.9980 268.0488 305.0000 92.7813 82 10.2179079055786 89.4080674167347 77.0220 76.0000 8.9387 188 1.3815
1018 35.0702 0.2523 G 1.2404 111.0702 108.0000 14.1964 57 8.51907634735107 89.5410603877622 76.2692 76.0000 9.0274 188 0.2523
1019 110.3467 0.7938 G 2.0921 186.3467 195.0000 42.1466 75 9.77204990386963 89.0731935799844 75.3736 76.0000 8.7155 188 0.7938
1020 38.7193 0.2785 G 1.0747 115.7193 116.0000 12.0420 57 8.51907634735107 107.671561773863 81.9670 77.0000 20.4477 188 0.2785
1021 18252.1699 131.2991 G 204.7539 18329.1699 5591.0000 20817.9121 149 13.7736234664917 89.5180675933353 78.5165 77.0000 8.3454 188 131.2991
1022 15520.5332 111.6487 G 170.2421 15597.5332 2194.0000 19467.6855 169 14.6689291000366 91.6197448718888 78.1500 77.0000 9.7465 124 111.6487
1024 13.7619 0.0990 G 1.0173 89.7619 91.0000 9.0154 42 7.3127326965332 88.237888986374 76.5556 76.0000 8.1586 177 0.0990

Total number of rows: 36227

Table truncated, full table size 4592 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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