|
Status |
Public on Nov 23, 2015 |
Title |
0640-047-Y10 |
Sample type |
RNA |
|
|
Source name |
PBMC
|
Organism |
Homo sapiens |
Characteristics |
pid: 0640_047 psi: 46 lag1psi: 44 chronicpsi: 0 age: 58 female: 0 hispanic: 0 black: 1 married: 0 lnincome: 11.3794 bmi: 23.7257 smoke: 1 alcohol: 1 cesd: 5 pss: 17 socsupp: 14 monocytepct: 8 cd3d: 12.2178 cd3e: 10.2114 cd4: 9.1476 cd8a: 11.543 cd19: 10.7761 ncam1: 7.3386 fcgr3a: 7.49 cd14: 12.9843
|
Extracted molecule |
total RNA |
Extraction protocol |
Primary peripheral blood mononuclear cells were isolated and total RNA was extracted using Qiagen RNEasy.
|
Label |
biotin
|
Label protocol |
Ambion TotalPrep RNA amplification with biotin labeling for gene expression profiling (carried out by UCLA Neuroscience Genomics Core).
|
|
|
Hybridization protocol |
Illumina cRNA hybridization protocol for gene expression profiling (carried out by UCLA Neuroscience Genomics Core).
|
Scan protocol |
Standard Illumina scan protocol for gene expression profiling (carried out by UCLA Neuroscience Genomics Core).
|
Description |
raw data file column: 9249907059_G.AVG_Signal Illumina Human HT-12 BeadArray
|
Data processing |
Raw probe intensity values and quantile-normalized gene expression values were generated by Illumina GenomeStudio software using Gene Expression module 1.1.1. All available data are provided, with no additional filtering.
|
|
|
Submission date |
Jan 28, 2015 |
Last update date |
Nov 23, 2015 |
Contact name |
Steve Cole |
Organization name |
UCLA School of Medicine
|
Department |
Medicine
|
Street address |
11-934 Factor Bldg, UCLA
|
City |
Los Angeles |
State/province |
CA |
ZIP/Postal code |
90095-1678 |
Country |
USA |
|
|
Platform ID |
GPL10904 |
Series (1) |
GSE65403 |
Leukocyte gene expression as a function of perceived social isolation (PSI): Year 10 |
|