NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Sample GSM1632723 Query DataSets for GSM1632723
Status Public on Mar 12, 2015
Title Patient A18, IBS, Baseline Before Intervention
Sample type RNA
 
Source name Peripheral blood
Organism Homo sapiens
Characteristics patient: A18
disease state: IBS
time point: baseline before intervention
tissue: peripheral blood
disease state: IBS
time point: baseline before intervention
tissue: peripheral blood
Treatment protocol Relaxation Response based mind-body group intervention (RR-MBI), focusing on elicitation of the RR and cognitive skill building.
Extracted molecule total RNA
Extraction protocol Total RNA was isolated from blood paxgene tubes using standard qiagen protocol.
Label biotin
Label protocol GeneChip 3’ IVT Express kit.
 
Hybridization protocol Samples were hybridized to Affymetrix HT HG-133+PM Array Plate GeneChips using the Affymetrix standard hybridization protocol.
Scan protocol Gene Titan System.
Description Patient A18
Data processing The data was normalised using Robust Multichip Average (RMA) method that include background adjustment, quantile normalization and final summarization of oligonucleotides per transcript using the median polish algorithm
 
Submission date Mar 12, 2015
Last update date Mar 12, 2015
Contact name Manoj Bhasin
Phone 6176670009
Organization name Beth Israel Deaconess Medical Center
Street address 330 Brookline Avenue RN 380E
City Boston
State/province MA
ZIP/Postal code 02115
Country USA
 
Platform ID GPL13158
Series (1)
GSE66824 Genomic and Clinical Effects Associated with a Relaxation Response Mind-Body Intervention in Patients with Irritable Bowel Syndrome and Inflammatory Bowel Disease

Data table header descriptions
ID_REF
VALUE Quantification

Data table
ID_REF VALUE
AFFX-BioB-5_at 4.74443
AFFX-BioB-M_at 5.86205
AFFX-BioB-3_at 5.45412
AFFX-BioC-5_at 9.19637
AFFX-BioC-3_at 8.41039
AFFX-BioDn-5_at 10.2405
AFFX-BioDn-3_at 11.756
AFFX-CreX-5_at 12.3303
AFFX-CreX-3_at 12.6005
AFFX-DapX-5_at 3.56357
AFFX-DapX-M_at 2.67539
AFFX-DapX-3_at 2.29975
AFFX-LysX-5_at 2.27123
AFFX-LysX-M_at 2.40208
AFFX-LysX-3_at 2.6067
AFFX-PheX-5_at 2.49895
AFFX-PheX-M_at 2.58163
AFFX-PheX-3_at 3.64078
AFFX-ThrX-5_at 2.59158
AFFX-ThrX-M_at 2.51139

Total number of rows: 54715

Table truncated, full table size 1159 Kbytes.




Supplementary file Size Download File type/resource
GSM1632723_A18_IBS0.CEL.gz 2.2 Mb (ftp)(http) CEL
GSM1632723_A18_IBS0.rma.chp.gz 379.6 Kb (ftp)(http) CHP
Processed data included within Sample table
Processed data provided as supplementary file

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap