|
| Status |
Public on Mar 12, 2015 |
| Title |
Patient A20, IBS, Baseline Before Intervention |
| Sample type |
RNA |
| |
|
| Source name |
Peripheral blood
|
| Organism |
Homo sapiens |
| Characteristics |
patient: A20
disease state: IBS
time point: baseline before intervention
tissue: peripheral blood
disease state: IBS
time point: baseline before intervention
tissue: peripheral blood
|
| Treatment protocol |
Relaxation Response based mind-body group intervention (RR-MBI), focusing on elicitation of the RR and cognitive skill building.
|
| Extracted molecule |
total RNA |
| Extraction protocol |
Total RNA was isolated from blood paxgene tubes using standard qiagen protocol.
|
| Label |
biotin
|
| Label protocol |
GeneChip 3’ IVT Express kit.
|
| |
|
| Hybridization protocol |
Samples were hybridized to Affymetrix HT HG-133+PM Array Plate GeneChips using the Affymetrix standard hybridization protocol.
|
| Scan protocol |
Gene Titan System.
|
| Description |
Patient A20
|
| Data processing |
The data was normalised using Robust Multichip Average (RMA) method that include background adjustment, quantile normalization and final summarization of oligonucleotides per transcript using the median polish algorithm
|
| |
|
| Submission date |
Mar 12, 2015 |
| Last update date |
Mar 12, 2015 |
| Contact name |
Manoj Bhasin |
| Phone |
6176670009
|
| Organization name |
Beth Israel Deaconess Medical Center
|
| Street address |
330 Brookline Avenue RN 380E
|
| City |
Boston |
| State/province |
MA |
| ZIP/Postal code |
02115 |
| Country |
USA |
| |
|
| Platform ID |
GPL13158 |
| Series (1) |
| GSE66824 |
Genomic and Clinical Effects Associated with a Relaxation Response Mind-Body Intervention in Patients with Irritable Bowel Syndrome and Inflammatory Bowel Disease |
|
