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Sample GSM1632768 Query DataSets for GSM1632768
Status Public on Mar 12, 2015
Title Patient B30, IBD, After 9 weeks of Intervention
Sample type RNA
 
Source name Peripheral blood
Organism Homo sapiens
Characteristics patient: B30
disease state: IBD
time point: after 9 weeks of intervention
tissue: peripheral blood
disease state: IBD
time point: after 9 weeks of intervention
tissue: peripheral blood
Treatment protocol Relaxation Response based mind-body group intervention (RR-MBI), focusing on elicitation of the RR and cognitive skill building.
Extracted molecule total RNA
Extraction protocol Total RNA was isolated from blood paxgene tubes using standard qiagen protocol.
Label biotin
Label protocol GeneChip 3’ IVT Express kit.
 
Hybridization protocol Samples were hybridized to Affymetrix HT HG-133+PM Array Plate GeneChips using the Affymetrix standard hybridization protocol.
Scan protocol Gene Titan System.
Description Patient B30
Data processing The data was normalised using Robust Multichip Average (RMA) method that include background adjustment, quantile normalization and final summarization of oligonucleotides per transcript using the median polish algorithm
 
Submission date Mar 12, 2015
Last update date Mar 12, 2015
Contact name Manoj Bhasin
Phone 6176670009
Organization name Beth Israel Deaconess Medical Center
Street address 330 Brookline Avenue RN 380E
City Boston
State/province MA
ZIP/Postal code 02115
Country USA
 
Platform ID GPL13158
Series (1)
GSE66824 Genomic and Clinical Effects Associated with a Relaxation Response Mind-Body Intervention in Patients with Irritable Bowel Syndrome and Inflammatory Bowel Disease

Data table header descriptions
ID_REF
VALUE Quantification

Data table
ID_REF VALUE
AFFX-BioB-5_at 5.00727
AFFX-BioB-M_at 5.96871
AFFX-BioB-3_at 5.54179
AFFX-BioC-5_at 9.32759
AFFX-BioC-3_at 8.5559
AFFX-BioDn-5_at 10.4422
AFFX-BioDn-3_at 11.7908
AFFX-CreX-5_at 12.5379
AFFX-CreX-3_at 12.7551
AFFX-DapX-5_at 3.704
AFFX-DapX-M_at 2.80189
AFFX-DapX-3_at 2.28995
AFFX-LysX-5_at 2.65362
AFFX-LysX-M_at 2.3729
AFFX-LysX-3_at 2.56633
AFFX-PheX-5_at 2.69171
AFFX-PheX-M_at 2.57765
AFFX-PheX-3_at 4.18307
AFFX-ThrX-5_at 2.70005
AFFX-ThrX-M_at 2.50935

Total number of rows: 54715

Table truncated, full table size 1159 Kbytes.




Supplementary file Size Download File type/resource
GSM1632768_B30_IBD_10.CEL.gz 2.1 Mb (ftp)(http) CEL
GSM1632768_B30_IBD_10.rma.chp.gz 379.9 Kb (ftp)(http) CHP
Processed data included within Sample table
Processed data provided as supplementary file

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