|
Status |
Public on Jul 15, 2015 |
Title |
B2_GlomAffyAnnot_Other_44 |
Sample type |
RNA |
|
|
Source name |
Kidney Biopsy from NEPTUNE subject
|
Organism |
Homo sapiens |
Characteristics |
tissue: kidney compartment: glomerulus histopath: Other apol1 risk status: High-Risk patient age: 14
|
Extracted molecule |
total RNA |
Extraction protocol |
Total RNA was isolated using Rneasy kit (Qiagen) following manufacturer's protocol
|
Label |
Biotin
|
Label protocol |
Biotinylated cRNA were prepared according to the standard Affymetrix protocol from total RNA (Expression Analysis Technical Manual, Affymetrix).
|
|
|
Hybridization protocol |
not provided
|
Scan protocol |
GeneChip arrays were scanned by GeneChip Scanner 3000 7G according to the Affymetrix Expression Analysis Technical Manual.
|
Description |
Gene expression from glomerulus Batch 1 and 2 normalizations are available on the series record. The batch-corrected normalized data are available in the sample tables.
|
Data processing |
Preprocessing, normalization with RMA, background correction performed with affymetrix powertools
|
|
|
Submission date |
Apr 21, 2015 |
Last update date |
Feb 01, 2017 |
Contact name |
Matthew Gordon Sampson |
E-mail(s) |
mgsamps@med.umich.edu
|
Organization name |
University of Michigan School of Medicine
|
Department |
Pediatrics
|
Street address |
8220DMSRB3 1150 West Medical Center Drive
|
City |
Ann Arbor |
State/province |
MI |
ZIP/Postal code |
48109 |
Country |
USA |
|
|
Platform ID |
GPL17692 |
Series (2) |
GSE68125 |
Integrative genomics identifies novel associations with APOL1 risk genotype in African American NEPTUNE subjects [glomerulus] |
GSE68127 |
Integrative genomics identifies novel associations with APOL1 risk genotype in African American NEPTUNE subjects |
|