NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Sample GSM187444 Query DataSets for GSM187444
Status Public on May 10, 2007
Title HNF4a chip chip on Caco-2 cells replica 2
Sample type genomic
 
Channel 1
Source name HNF4a IP DNA
Organism Homo sapiens
Characteristics HNF4a antibody IP DNA
Extracted molecule genomic DNA
Extraction protocol HNF4a bound crosslinked genomic DNA was immunopurfied from Caco2 cells and amplified before labelling and hybridisation
Label Cy5
Label protocol According to standard NimbleGen protocols.
 
Channel 2
Source name Input genomic DNA
Organism Homo sapiens
Characteristics whole genome DNA from Caco-2 cells
Extracted molecule genomic DNA
Extraction protocol whole genome DNA from Caco-2 cells was amplified before labelling and hybridisation
Label Cy3
Label protocol According to standard NimbleGen protocols.
 
 
Hybridization protocol According to standard NimbleGen protocols.
Scan protocol According to standard NimbleGen protocols.
Description Caco2 DNA
Data processing log base 2 (Rval/Gval) ratios; log2 values that have been scaled by subtracting the bi-weight mean of all experimental values from each value
 
Submission date May 07, 2007
Last update date May 09, 2007
Contact name Jesper T Troelsen
E-mail(s) troelsen@imbg.ku.dk
Organization name Univ. of Copenhagen
Street address Blegdamsvej 3b
City Copenhagen
ZIP/Postal code Dk-2200
Country Denmark
 
Platform ID GPL5139
Series (1)
GSE7745 Mapping of HNF4α binding sites, acetylation of histone H3 and expression in Caco2 cells

Data table header descriptions
ID_REF
Rval raw value for the HNF4a ip
Gval raw value for the genomic input DNA
VALUE log2(Rval/Gval) (log2 values that have been scaled by subtracting the bi-weight mean of all experimental values from each value)

Data table
ID_REF Rval Gval VALUE
CHR10P000085019_HSAP0406S00017825 2542 2658 0.97
CHR10P000085059_HSAP0406S00017825 778 1614 -0.02
CHR10P000085079_HSAP0406S00017825 691 1555 -0.14
CHR10P000085099_HSAP0406S00017825 818 1753 -0.07
CHR10P000085109_HSAP0406S00017825 864 1394 0.34
CHR10P000085119_HSAP0406S00017825 588 1162 0.05
CHR10P000085129_HSAP0406S00017825 760 1354 0.20
CHR10P000085139_HSAP0406S00017825 873 1353 0.40
CHR10P000085149_HSAP0406S00017825 724 1209 0.29
CHR10P000085169_HSAP0406S00017825 2303 2590 0.86
CHR10P000085199_HSAP0406S00017825 1617 2690 0.30
CHR10P000085219_HSAP0406S00017825 742 1730 -0.19
CHR10P000085229_HSAP0406S00017825 2199 3179 0.50
CHR10P000085239_HSAP0406S00017825 4050 4369 0.92
CHR10P000085259_HSAP0406S00017825 1107 2450 -0.11
CHR10P000169373_HSAP0406S00017827 401 1265 -0.62
CHR10P000169513_HSAP0406S00017827 437 1508 -0.75
CHR10P000169683_HSAP0406S00017827 549 1606 -0.52
CHR10P000169783_HSAP0406S00017827 784 1585 0.02
CHR10P000169843_HSAP0406S00017827 698 1677 -0.23

Total number of rows: 359309

Table truncated, full table size 16998 Kbytes.




Supplementary data files not provided
| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap