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GEO accession:
Sample GSM1946757
Query DataSets for GSM1946757
Status
Public on Jun 26, 2019
Title
tumor sample 1
Sample type
RNA
Source name
ESCC patient 1
Organism
Homo sapiens
Characteristics
patient: 1
tissue: esophageal tumor
tumor differentiation: poor
Extracted molecule
total RNA
Extraction protocol
RNEAsy MINI KIT QIAGEN
Label
biotin
Label protocol
AFFYMETRIX GENECHIP WT TERMINAL LABELING AND HYBRIDIZATION KIT
Hybridization protocol
AFFYMETRIX GENECHIP WT TERMINAL LABELING AND HYBRIDIZATION KIT
Scan protocol
Genechip Scanner 3000 7G
Description
TUMOR_01
Data processing
EXPRESSION CONSOLE AFFYMETRIX, RMA
HuEx-1_0-st-v2.r2.pgf
HuEx-1_0-st-v2.r2.dt1.hg18.core.mps
Submission date
Nov 20, 2015
Last update date
Jun 26, 2019
Contact name
Pedro Nicolau Neto
E-mail(s)
pedronicolau.n@gmail.com
Organization name
INCA
Department
PCM
Street address
37 Andre Cavalcanti Street
City
Rio de Janeiro
State/province
RJ
ZIP/Postal code
20231-050
Country
Brazil
Platform ID
GPL5175
Series (1)
GSE75241
Gene expression profile of esophageal squamous cell carcinoma
Data table header descriptions
ID_REF
VALUE
RMA ESTIMATES FROM EXPRESSION CONSOLE SOFTWARE
Data table
ID_REF
VALUE
3948543
8.5126
3063807
8.48088
3096575
9.72721
2949118
7.88565
3227645
10.3185
4014076
4.15163
2637819
3.73334
3850234
9.28611
3719161
9.73143
2916345
7.68286
2342904
8.46365
3817464
8.88906
2408437
8.90106
3932148
8.37339
3375091
8.26684
3653619
8.90713
2818035
6.06547
3063795
8.71682
2359282
9.84993
2981874
9.81554
Total number of rows:
22011
Table truncated, full table size
341 Kbytes
.
Supplementary file
Size
Download
File type/resource
GSM1946757_TUMOR_01.CEL.gz
25.9 Mb
(ftp)
(http)
CEL
GSM1946757_TUMOR_01.rma-gene-core.chp.gz
178.7 Kb
(ftp)
(http)
CHP
Processed data included within Sample table
Processed data provided as supplementary file
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