|
| Status |
Public on Mar 29, 2017 |
| Title |
case55 |
| Sample type |
RNA |
| |
|
| Source name |
lung
|
| Organism |
Homo sapiens |
| Characteristics |
age: 53
Sex: F
race: AA
bmi: 20.81
packyears: 40
copd: case
fev1.pp: 17
fev1fvc: 0.25
laa950: 0.512473
perc15: -992.772
pi10: 4.1106
ID: 2928
tissue: lung
|
| Treatment protocol |
NA
|
| Growth protocol |
NA
|
| Extracted molecule |
total RNA |
| Extraction protocol |
RNA was extracted from lung tissues using Allprep kit (Qiagen, Valencia, CA).
|
| Label |
biotin
|
| Label protocol |
standard Illumina protocol
|
| |
|
| Hybridization protocol |
Total RNA for each sample was hybridized onto a HumanHT-12 Expression BeadChip Array (Illumina, San Diego, CA), based on the manufacturer's protocol.
|
| Scan protocol |
The BeadChip Array was scanned using an Illumina BeadArray Reader and quality control analysis was performed using Illumina GenomeStudio software
|
| Description |
case FEV1.PP: 17
sample67
|
| Data processing |
Each of the samples and all probes passed quality control, and the data were background corrected, log2 transformed and quantile normalized.
|
| |
|
| Submission date |
Jan 15, 2016 |
| Last update date |
Mar 29, 2017 |
| Contact name |
Jarrett Morrow |
| Organization name |
Brigham and Women's Hospital
|
| Department |
Channing Division of Network Medicine
|
| Street address |
181 Longwood Ave.
|
| City |
Boston |
| State/province |
MA |
| ZIP/Postal code |
02115 |
| Country |
USA |
| |
|
| Platform ID |
GPL10558 |
| Series (1) |
| GSE76925 |
Functional interactors of genomewide association study genes are differentially expressed in severe chronic obstructive pulmonary disease lung tissue |
|
