|
| Status |
Public on May 10, 2016 |
| Title |
high grade serous ovarian cancer (EOC99) |
| Sample type |
genomic |
| |
|
| Source name |
Fresh-frozen high grade serous ovarian cancer sample from patient undergoing surgical resection at Roswell Park Cancer Institute
|
| Organism |
Homo sapiens |
| Characteristics |
gender: Female
patient age: 26
tumor type: ovarian cancer
tumor histology: serous
Stage: IIIB
grade: 3
|
| Treatment protocol |
None
|
| Growth protocol |
None
|
| Extracted molecule |
genomic DNA |
| Extraction protocol |
Isolated genomic DNA using the Puregene Tissue Kit (Qiagen), which includes RNAse treatment
|
| Label |
Cy5 and Cy3
|
| Label protocol |
Standard Illumina Protocol
|
| |
|
| Hybridization protocol |
Bisulfite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450K Beadchip using standard Illumina protocol
|
| Scan protocol |
Arrays were imaged using BeadArray Reader using standard recommended Illumina scanner setting
|
| Description |
Female high grade serous ovarian cancer, primary tumor
|
| Data processing |
Rnbeads Version 1.0.0
|
| |
|
| Submission date |
May 09, 2016 |
| Last update date |
May 10, 2016 |
| Contact name |
Adam R. Karpf |
| E-mail(s) |
adam.karpf@unmc.edu
|
| Phone |
402-559-6115
|
| Organization name |
University of Nebraska Medical Center
|
| Department |
Eppley Institute for Research in Cancer
|
| Street address |
985950 Nebraska Medical Center
|
| City |
Omaha |
| State/province |
Nebraska |
| ZIP/Postal code |
68198-5950 |
| Country |
USA |
| |
|
| Platform ID |
GPL13534 |
| Series (2) |
| GSE81224 |
DNA methylome analyses implicate fallopian tube as the tissue of origin for high grade serous ovarian cancer [array] |
| GSE81228 |
DNA methylome analyses implicate fallopian tube as the tissue of origin for high grade serous ovarian cancer |
|
