|
| Status |
Public on Jun 21, 2017 |
| Title |
HCC023T |
| Sample type |
RNA |
| |
|
| Source name |
tumor tissue
|
| Organism |
Homo sapiens |
| Characteristics |
subject status: HCC patient
subject id: HCC023
gender: Male
age: 47
tissue: liver
tissue type: tumor tissue
tnm staging: T1N0M0
|
| Growth protocol |
tumor tissues and non-tumor liver tissues from 38 HCC patients
|
| Extracted molecule |
total RNA |
| Extraction protocol |
not applicable
|
| Label |
Biotin
|
| Label protocol |
Samples were enzymatically fragmented and biotinylated using the WT Terminal Labeling Kit (Affymetrix)
|
| |
|
| Hybridization protocol |
Hybridization was performed for 16 hrs using the MES_EukGE-WS2v5_450-DEV fluidics wash and stain script.
|
| Scan protocol |
The arrays were scanned using the Affymetrix GeneChip scanner 3000 7G
|
| Description |
SAMPLE 23
|
| Data processing |
RMA (Robust Multiple chip Average) and quantile normalization integrated in Expression Console was used to extract the signal from core probes representing 22,012 transcript clusters and perform the preprocessing.
probe group file: HuEx-1_0-st-v2.pgf
meta-probeset file: HuEx-1_0-st-v2.r2.dt1.hg18.core.mps
|
| |
|
| Submission date |
Jul 05, 2016 |
| Last update date |
Jun 21, 2017 |
| Contact name |
Jin Song |
| E-mail(s) |
hanhui@stu.ahmu.edu.cn
|
| Phone |
18601331131
|
| Organization name |
Beijing Institute of Radiation Medicine
|
| Street address |
No.38 shengmingyuan Road
|
| City |
Beijing |
| ZIP/Postal code |
102206 |
| Country |
China |
| |
|
| Platform ID |
GPL5175 |
| Series (2) |
| GSE84005 |
Integrative omics analysis in HCC samples [mRNA expression] |
| GSE84006 |
Integrative omics analysis in HCC samples |
|
