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Sample GSM22413 Query DataSets for GSM22413
Status Public on Jun 07, 2004
Title microdissected breast cancer cells from case 1260
Sample type RNA
 
Channel 1
Source name RNA from microdissected breast cancer cells from case 1260 labeled with Cy5
Organism Homo sapiens
Extracted molecule total RNA
 
Channel 2
Source name human universal reference RNA (Stratagene) labeled with Cy3
Organism Homo sapiens
Extracted molecule total RNA
 
 
Description Highly enriched breast cancer cells procured by LCM.
Clinical information: Sample.ID=1260;Tumor.type=D;Size=3.5;Grade=2;Nodes=0/14;ER=Pos;PR=Pos;HER2=Neg;Age=58;DFS=79;Status=non-recur
Keywords = breast cancer, tamoxifen, recurrence
 
Submission date May 07, 2004
Last update date Feb 12, 2015
Contact name Xiao-Jun Ma
E-mail(s) xma@aviaradx.com
Organization name AviaraDx, Inc.
Lab Bioinformatics
Street address 2715 Loker Ave. W.
City Carlsbad
State/province CA
ZIP/Postal code 92010
Country USA
 
Platform ID GPL1223
Series (1)
GSE1378 breast cancer / tamoxifen monotherapy (microdissected tumor biopsies)

Data table header descriptions
ID_REF
VALUE log ratio (log2 of PRE_VALUE)
RefRawSignal Raw Cy3 intensity
ExpRawSignal Raw Cy5 intensity
PRE_VALUE Normalized ratio of Cy5/Cy3

Data table
ID_REF VALUE RefRawSignal ExpRawSignal PRE_VALUE
2508 0.1105543 3665.5 3924.5 1.0796428225981944
6459 -0.4458863 973.0 516.0 0.7341335529973918
16790 0.4655773 251.0 251.0 1.380869364440565
4210 0.1646713 138.0 114.0 1.120910766902237
13392 0.3778223 3453.5 4493.5 1.2993791227383094
1575 0.2119803 227.0 191.0 1.1582765537691955
9300 0.1234283 179.5 143.0 1.089320133379055
5306 -0.0394343 168.0 120.0 0.9730368446263234
4514 -0.0530083 156.5 111.0 0.9639246117879416
8664 1.1687113 156.0 255.0 2.248108102550069
1645 0.5101063 271.0 279.0 1.4241552417839336
13828 0.4404013 182.0 180.0 1.3569810431780307
3944 -0.0004523 141.0 104.0 0.9996869658103233
500 -0.3306733 1870.0 1183.0 0.7951655545301228
21226 0.6187513 316.5 350.0 1.53554526843486
15545 -1.2500923 2006.0 640.0 0.42042140215210677
6346 -0.2110223 363.0 226.5 0.8639248839933154
4381 0.2799813 133.0 119.0 1.214179048920092
3385 -2.0383473 4078.5 822.0 0.24344245889936508
19553 0.7081283 193.0 229.0 1.6336833896740754

Total number of rows: 22575

Table truncated, full table size 1058 Kbytes.




Supplementary data files not provided
Raw data included within Sample table
Processed data included within Sample table

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