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Sample GSM225005 Query DataSets for GSM225005
Status Public on Dec 30, 2008
Title control, rep3
Sample type RNA
 
Source name Rat Liver without treatment
Organism Rattus norvegicus
Characteristics Female Sprague Dawley rats
Treatment protocol Rats were fed with Harlan Teklad Rodent diet, 4% mash diet (control)
Extracted molecule total RNA
Extraction protocol Stat-60 extraction
Label biotin
Label protocol Enzo labeling kit
 
Hybridization protocol Following fragmentation, 20ug of cRNA were hybridized for 16 hr at 45C on GeneChip Rat Genome 230 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
Scan protocol GeneChips were scanned using the Affymetrix 7G GeneChip Scanner .
Description Gene expression data from livers of rats that were not treated with chemicals
Data processing The data were analyzed with Bioconductor using GC-RMA analysis.
 
Submission date Aug 27, 2007
Last update date Aug 14, 2011
Contact name Thomas R Sutter
E-mail(s) tsutter@memphis.edu
Phone 901-678-8391
Organization name University of Memphis
Department Biology
Lab Feinstone Research Lab
Street address 3774 Walker Ave.
City Memphis
State/province TN
ZIP/Postal code 38152
Country USA
 
Platform ID GPL1355
Series (1)
GSE8880 Analyzing microarray data with transitive directed acyclic graphs

Data table header descriptions
ID_REF
VALUE GC-RMA - Calculated Signal Intensity
ABS_CALL the call in an absolute analysis that indicates if the transcript was present (P), absent (A), or marginal (M)

Data table
ID_REF VALUE ABS_CALL
1367452_at 10.43391913 P
1367453_at 9.851711531 P
1367454_at 9.519265118 P
1367455_at 11.45066393 P
1367456_at 12.20240717 P
1367457_at 8.697417485 P
1367458_at 7.365056447 P
1367459_at 12.65990972 P
1367460_at 11.50903288 P
1367461_at 9.812856535 P
1367462_at 9.604954399 P
1367463_at 11.32740374 P
1367464_at 9.325613065 P
1367465_at 9.791092161 P
1367466_at 9.26594917 P
1367467_at 11.06001337 P
1367468_at 8.771661258 P
1367469_at 12.16035663 P
1367470_at 10.52608282 P
1367471_at 9.308151923 P

Total number of rows: 31042

Table truncated, full table size 757 Kbytes.




Supplementary file Size Download File type/resource
GSM225005.CEL.gz 2.6 Mb (ftp)(http) CEL
Processed data included within Sample table

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