|
Status |
Public on Jan 06, 2017 |
Title |
AEC methylation data_74f3_4f8a |
Sample type |
genomic |
|
|
Source name |
airway epithelial cells
|
Organism |
Homo sapiens |
Characteristics |
age: 54 cell type: airway epithelial cells disease status: Asthma gender: Female ethnicity: AA ChIP: 9904796060 well: R01C01
|
Extracted molecule |
genomic DNA |
Extraction protocol |
AECs were harvested via bronchial brushing and DNA/RNA was extracted consecutively using the AllPrep kit from QIAgen
|
Label |
Cy3 and Cy5
|
Label protocol |
Standard Illumina Protocol
|
|
|
Hybridization protocol |
bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450K Beadchip using standard Illumina protocol
|
Scan protocol |
Arrays were imaged using BeadArray Reader using standard recommended Illumina scanner setting
|
Data processing |
minfi protocol
|
|
|
Submission date |
Aug 12, 2016 |
Last update date |
May 08, 2018 |
Contact name |
Carole Ober |
E-mail(s) |
c-ober@genetics.uchicago.edu
|
Organization name |
The University of Chicago
|
Department |
Human Genetics
|
Lab |
Ober
|
Street address |
920 E 58TH ST
|
City |
Chicago |
State/province |
IL |
ZIP/Postal code |
60637 |
Country |
USA |
|
|
Platform ID |
GPL13534 |
Series (2) |
GSE85566 |
DNA methylation in lung cells is a key modulator of asthma endotypes and genetic risk [DNA methylation] |
GSE85568 |
DNA methylation in lung cells is a key modulator of asthma endotypes and genetic risk |
|