|
| Status |
Public on Jan 06, 2017 |
| Title |
AEC methylation data_ede5_46de |
| Sample type |
genomic |
| |
|
| Source name |
airway epithelial cells
|
| Organism |
Homo sapiens |
| Characteristics |
age: 41
cell type: airway epithelial cells
disease status: Asthma
gender: Female
ethnicity: EA
ChIP: 9904796063
well: R05C02
|
| Extracted molecule |
genomic DNA |
| Extraction protocol |
AECs were harvested via bronchial brushing and DNA/RNA was extracted consecutively using the AllPrep kit from QIAgen
|
| Label |
Cy3 and Cy5
|
| Label protocol |
Standard Illumina Protocol
|
| |
|
| Hybridization protocol |
bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450K Beadchip using standard Illumina protocol
|
| Scan protocol |
Arrays were imaged using BeadArray Reader using standard recommended Illumina scanner setting
|
| Data processing |
minfi protocol
|
| |
|
| Submission date |
Aug 12, 2016 |
| Last update date |
May 08, 2018 |
| Contact name |
Carole Ober |
| E-mail(s) |
c-ober@genetics.uchicago.edu
|
| Organization name |
The University of Chicago
|
| Department |
Human Genetics
|
| Lab |
Ober
|
| Street address |
920 E 58TH ST
|
| City |
Chicago |
| State/province |
IL |
| ZIP/Postal code |
60637 |
| Country |
USA |
| |
|
| Platform ID |
GPL13534 |
| Series (2) |
| GSE85566 |
DNA methylation in lung cells is a key modulator of asthma endotypes and genetic risk [DNA methylation] |
| GSE85568 |
DNA methylation in lung cells is a key modulator of asthma endotypes and genetic risk |
|
