|
| Status |
Public on Oct 18, 2016 |
| Title |
case4_T5_Meth |
| Sample type |
genomic |
| |
|
| Source name |
case4_Primary colorectal tumor tissue
|
| Organism |
Homo sapiens |
| Characteristics |
case id: case4
gender: male
age: 61
tissue type: Primary colorectal tumor tissue
primary tumor defferentiation: well to moderately differentiated
tumor or normal colon location: rectum
|
| Extracted molecule |
genomic DNA |
| Extraction protocol |
Total DNA was isolated by standard procedures
|
| Label |
Cy3, Cy5
|
| Label protocol |
Standard Illumina labelling protocol
|
| |
|
| Hybridization protocol |
Illumina standard protocol
|
| Scan protocol |
Illumina iScan System according to the manufacturer's protocol
|
| Description |
SAMPLE 39
|
| Data processing |
Mean background-corrected and normalized signal intensities of the methylation (M) and unmethylated (U) estimates for each CpG locus were extracted using Illumina BeadStudio software
the non_normalized.txt contains unmethylated and methylated signal intensities
|
| |
|
| Submission date |
Oct 17, 2016 |
| Last update date |
May 01, 2017 |
| Contact name |
RYUTARO UCHI |
| Organization name |
KYUSHUUNIVERSItY
|
| Street address |
MAIDASHI3-1-1
|
| City |
FUKUOKA |
| State/province |
FUKUOKA |
| ZIP/Postal code |
812-8582 |
| Country |
Japan |
| |
|
| Platform ID |
GPL13534 |
| Series (2) |
| GSE88821 |
Methylation dataset of multi regional colorectal carcinoma. |
| GSE90709 |
Methylation, expression, and SNP data of multi regional colorectal carcinoma |
|
