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Sample GSM24 Query DataSets for GSM24
Status Public on Jan 24, 2001
Title NHGRI_TC-F027
Sample type RNA
 
Channel 1
Source name melanoma, chest
Organism Homo sapiens
Extracted molecule total RNA
 
Channel 2
Source name NHGRI_Melanoma_Ref
Organism Homo sapiens
Extracted molecule total RNA
 
 
Description Biopsy location: right chest wall
Patient sex: male
Patient age: 30
Passage number: 6
p16 mutation status: ND
Invasive ability: ND
Vasculogenic mimicry: ND
Gel contraction: ND
Cell motility: ND
Scratch wound (%): 91

See http://www.nhgri.nih.gov/DIR/Microarray/Nature_paper.pdf
and http://www.nhgri.nih.gov/DIR/Microarray/Melanoma_Supplement/index.html
 
Submission date Jan 08, 2001
Last update date May 27, 2005
Contact name Michael Bittner
E-mail(s) mbittner@nhgri.nih.gov
Phone 301-496-7980
Fax 301-402-3241
URL http://www.nhgri.nih.gov/Intramural_research/People/bittnerm.html
Organization name NHGRI, NIH
Department Cancer Genetics Branch
Street address
City Bethesda
State/province MD
ZIP/Postal code 20892
Country USA
 
Platform ID GPL7
Series (1)
GSE1 NHGRI_Melanoma_class

Data table header descriptions
ID_REF
CH1_TARGET_TOP Sample 1 (Red Channel) target location in image - top
CH1_TARGET_LT Sample 1 (Red Channel) target location in image - left
CH1_TARGET_BOT Sample 1 (Red Channel) target location in image - bottom
CH1_TARGET_RT Sample 1 (Red Channel) target location in image - right
CH1_RAW Sample 1 (Red Channel) Total Intensity
CH1_MEAN Sample 1 (Red Channel) Mean Intensity
CH1_SD Sample 1 (Red Channel) Standard Deviation
CH1_AREA Sample 1 (Red Channel) Area
CH1_BKD_MEAN Sample 1 (Red Channel) Mean Background Level
CH1_BKD_SD Sample 1 (Red Channel) Background Standard Deviation
CH2_TARGET_TOP Sample 2 (Green Channel) target location in image - top
CH2_TARGET_LT Sample 2 Green Channel) target location in image - left
CH2_TARGET_BOT Sample 2 Green Channel) target location in image - bottom
CH2_TARGET_RT Sample 2 Green Channel) target location in image - right
CH2_RAW Sample 2 Green Channel) Total Intensity
CH1_MEAN Sample 1 (Red Channel) Mean Intensity
CH2_SD Sample 2 Green Channel) Standard Deviation
CH2_AREA Sample 2 Green Channel) Area
CH2_BKD_MEAN Sample 2 Green Channel) Mean Background Level
CH2_BKD_SD Sample 2 Green Channel) Background Standard Deviation
UNION_AREA Union Area
RATIO Raw Ratio
VALUE log ratio of PRE_VALUE
CONF_LEVEL Confidence Level - fixed at 99%
CONF_LOW Confidence Interval - Lower Bound - Raw Ratio
CONF_UP Confidence Interval - Upper Bound - Raw Ratio
NORM_FACTOR M-value
CV Coefficient of variance
PRE_VALUE Calibrated Ratio

Data table
ID_REF CH1_TARGET_TOP CH1_TARGET_LT CH1_TARGET_BOT CH1_TARGET_RT CH1_RAW CH1_MEAN CH1_SD CH1_AREA CH1_BKD_MEAN CH1_BKD_SD CH2_TARGET_TOP CH2_TARGET_LT CH2_TARGET_BOT CH2_TARGET_RT CH2_RAW CH1_MEAN CH2_SD CH2_AREA CH2_BKD_MEAN CH2_BKD_SD UNION_AREA RATIO VALUE CONF_LEVEL CONF_LOW CONF_UP NORM_FACTOR CV PRE_VALUE
1 98 162 116 180 1370923 7201.0 2081.7 134 2733.2 385.1 98 162 116 180 3286988 19636.4 5453.2 142 4182.4 278.8 146 0.367 -0.5850273 99.000 0.589 3.374 1.410 0.209 0.260
2 116 162 134 180 1961316 11653.4 4195.1 141 2559.0 362.6 116 162 134 180 2280141 12383.0 5032.5 126 4139.8 275.5 146 0.941 -0.1752243 99.000 0.589 3.374 1.410 0.209 0.668
3 134 162 152 180 1 1.0 0.0 0 2306.7 258.1 134 162 152 180 1 1.0 0.0 0 4056.6 254.8 0 1.000 -0.1493543 99.000 0.589 3.374 1.410 0.209 0.709
4 152 162 170 180 436484 1314.0 396.1 123 2323.4 270.5 152 162 170 180 606099 1024.3 455.6 95 4026.5 258.6 128 1.283 -0.0409593 99.000 0.589 3.374 1.410 0.209 0.910
5 171 162 189 180 806116 3570.1 1090.9 134 2401.1 312.4 171 162 189 180 851826 2320.7 905.7 131 3989.1 245.5 143 1.538 0.0378253 99.000 0.589 3.374 1.410 0.209 1.091
6 189 162 207 180 479442 1711.0 523.2 103 2422.2 393.0 189 162 207 180 592145 1114.3 330.6 107 3990.4 250.1 124 1.536 0.0370283 99.000 0.589 3.374 1.410 0.209 1.089
7 207 162 225 180 819813 3804.7 1124.0 138 2179.4 405.8 207 162 225 180 817928 1969.2 660.0 133 4001.1 267.6 145 1.932 0.1367213 99.000 0.589 3.374 1.410 0.209 1.370
8 225 162 243 180 2206428 13273.5 5440.5 146 1839.0 378.3 225 162 243 180 4765457 28639.1 12584.3 146 4001.0 289.4 154 0.463 -0.4828043 99.000 0.589 3.374 1.410 0.209 0.329
9 243 162 261 180 1441520 8966.7 2593.8 141 1711.2 369.0 243 162 261 180 1885776 10015.1 2893.4 126 3953.6 282.4 143 0.895 -0.1972263 99.000 0.589 3.374 1.410 0.209 0.635
10 262 162 280 180 3092931 19774.9 9835.7 153 1555.7 289.4 262 162 280 180 2947378 16409.4 8936.0 127 3917.3 277.2 153 1.205 -0.0680343 99.000 0.589 3.374 1.410 0.209 0.855
11 280 162 298 180 979567 6143.8 1743.6 129 1509.1 283.9 280 162 298 180 1531530 8102.8 2944.7 126 3862.3 255.5 136 0.758 -0.2692183 99.000 0.589 3.374 1.410 0.209 0.538
12 298 161 316 179 2295658 17482.7 7931.1 129 1489.7 289.6 298 161 316 179 2168115 14060.3 7790.0 100 3858.1 266.9 129 1.243 -0.0545313 99.000 0.589 3.374 1.410 0.209 0.882
13 91 774 109 792 424861 3093.3 1296.9 97 1426.5 260.6 91 774 109 792 529485 1803.3 915.9 85 3829.5 234.4 102 1.715 0.0852913 99.000 0.589 3.374 1.410 0.209 1.217
14 109 774 127 792 2376077 21194.9 21010.1 113 1434.5 259.4 109 774 127 792 1497210 10415.2 18355.8 31 3844.0 239.7 113 2.035 0.1592663 99.000 0.589 3.374 1.410 0.209 1.443
15 127 774 145 792 4470388 34865.9 23555.5 131 1478.7 293.2 127 774 145 792 3245905 22530.6 23597.6 93 3858.9 257.3 131 1.547 0.0406023 99.000 0.589 3.374 1.410 0.209 1.098
16 146 774 164 792 3804666 29962.0 24849.5 129 1481.5 289.9 146 774 164 792 2978871 20744.8 23934.0 69 3874.0 269.5 129 1.444 0.0103003 99.000 0.589 3.374 1.410 0.209 1.024
17 164 774 182 792 671351 7598.8 10442.8 58 1473.5 291.8 164 774 182 792 503965 2943.9 3072.6 78 3866.4 261.3 82 2.581 0.2626883 99.000 0.589 3.374 1.410 0.209 1.831
18 182 774 200 792 1622602 11629.1 4368.4 130 1456.4 267.6 182 774 200 792 1489260 8130.8 3386.9 119 3879.4 263.4 132 1.430 0.0060383 99.000 0.589 3.374 1.410 0.209 1.014
19 201 774 219 792 272712 1329.1 535.7 89 1482.3 285.3 201 774 219 792 536723 1640.3 695.4 96 3893.0 269.0 105 0.810 -0.2403323 99.000 0.589 3.374 1.410 0.209 0.575
20 219 774 237 792 4504207 32374.8 14750.1 141 1491.4 287.1 219 774 237 792 4317551 28560.7 14159.5 123 3902.1 273.7 141 1.134 -0.0947443 99.000 0.589 3.374 1.410 0.209 0.804

Total number of rows: 8192

Table truncated, full table size 1265 Kbytes.




Supplementary data files not provided
Processed data included within Sample table
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