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Status |
Public on Jan 02, 2018 |
Title |
colorectal cancer sample AUS2_540 |
Sample type |
RNA |
|
|
Source name |
Colorectal cancer patient
|
Organism |
Homo sapiens |
Characteristics |
tissue: colorectal cancer biopsy
|
Extracted molecule |
total RNA |
Extraction protocol |
Total RNA was isolated from colorectal cancer tissue samples using the Qiagen Allprep DNA/RNA/miRNA Universal kit, according to the manufacturer's protocol (Qiagen).
|
Label |
biotin
|
Label protocol |
RNA was amplified, fragmented and labelled according to the Affymetrix GeneChip HT WT User Guide.
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|
|
Hybridization protocol |
Samples were hybridized onto Affymetrix Human Transcriptome 2.0 Arrays according to the manufacturer's protocol (Affymetrix).
|
Scan protocol |
Array scanning was performed according to the manufacturer's protocol (Affymetrix).
|
Description |
SST RMA expression values at the gene-level derived using Expression Console software
|
Data processing |
Gene-level expression signals were obtained from raw data CEL files by the SST RMA procedure implemented in the Affymetrix Expression Console software.
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|
|
Submission date |
Mar 13, 2017 |
Last update date |
Jan 02, 2018 |
Contact name |
Anita Sveen |
E-mail(s) |
anita.sveen@rr-research.no
|
Organization name |
Institute for Cancer Research, Oslo University Hospital
|
Department |
Department of Molecular Oncology
|
Street address |
P.O.Box 4953, Nydalen
|
City |
Oslo |
ZIP/Postal code |
NO-0424 |
Country |
Norway |
|
|
Platform ID |
GPL17586 |
Series (1) |
GSE96528 |
Gene expression profiling of colorectal cancer tissue samples. |
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