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Sample GSM2545899 Query DataSets for GSM2545899
Status Public on Mar 23, 2017
Title miR-NC C
Sample type RNA
 
Source name Supraclavicular Lymph Node
Organism Homo sapiens
Characteristics cell line: LNCaP
transfection: miR-NC
Treatment protocol Transient transfection for 24 hours with 30nM miRNA with Lipofectamine 2000
Growth protocol RPMI supplemented with 10% FBS
Extracted molecule total RNA
Extraction protocol Modified Trizol protocol
Label biotin
Label protocol Biotinylated cRNA were prepared with the Ambion MessageAmp kit for Illumina arrays
 
Hybridization protocol Standard Illumina hybridization protocol
Scan protocol Standard Illumina scanning protocol
Description Androgen Sensitive cell line
Data processing The data were normalised using quantile normalisation with IlluminaGUI in R
 
Submission date Mar 22, 2017
Last update date Mar 23, 2017
Contact name Peter Leedman
E-mail(s) kirsty.richardson@perkins.uwa.edu.au
Organization name Harry Perkins Institute of Medical Research
Street address 6 Verdun Street
City Nedlands
ZIP/Postal code 6009
Country Australia
 
Platform ID GPL6884
Series (1)
GSE96918 miR-NC or miR-331-3p treatment of LNCaP prostate cancer cells

Data table header descriptions
ID_REF
VALUE quantile normalized
Detection Pval

Data table
ID_REF VALUE Detection Pval
ILMN_1762337 6.649093971 0.04875
ILMN_2055271 6.979472051 0.94203
ILMN_1736007 6.701692611 0.17128
ILMN_2383229 6.670095834 0.08564
ILMN_1806310 6.813666743 0.65613
ILMN_1779670 6.88516796 0.82872
ILMN_2321282 6.75296173 0.42029
ILMN_1671474 6.685796041 0.12385
ILMN_1772582 6.828809799 0.70883
ILMN_1735698 6.832476829 0.71673
ILMN_1653355 7.244083303 0.98551
ILMN_1717783 6.750270946 0.41502
ILMN_1705025 6.722832706 0.27009
ILMN_1814316 6.722832706 0.27141
ILMN_2359168 6.742443575 0.36759
ILMN_1731507 6.724115289 0.27141
ILMN_1787689 6.868984151 0.80237
ILMN_1745607 6.65934298 0.06851
ILMN_2136495 6.817975074 0.67325
ILMN_1668111 6.702541873 0.17655

Total number of rows: 48802

Table truncated, full table size 1506 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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