|
| Status |
Public on Oct 27, 2017 |
| Title |
Xenopus RNAseq Heart Female1 Adult |
| Sample type |
SRA |
| |
|
| Source name |
Heart
|
| Organism |
Xenopus tropicalis |
| Characteristics |
tissue: Heart
Stage: Adult
Sex: Female
|
| Extracted molecule |
polyA RNA |
| Extraction protocol |
QIAGEN RNeasy Kit
Illumina TruSeq Stranded mRNA Library protocol
|
| |
|
| Library strategy |
RNA-Seq |
| Library source |
transcriptomic |
| Library selection |
cDNA |
| Instrument model |
Illumina HiSeq 2500 |
| |
|
| Description |
Xenopus_RNAseq_Heart_Female1_Adult_957sTS
|
| Data processing |
RNA-seq reads were mapped to genomes using the GSNAP short read alignment program
Gene expression estimates of protein-coding genes (FPKM) were performed using Cufflinks (v2.2.1).
Genome_build: version 77 of Ensembl
Supplementary_files_format_and_content: Text file to be opened in R. The file contains the final expression values for all species used in this study.
|
| |
|
| Submission date |
Apr 04, 2017 |
| Last update date |
May 15, 2019 |
| Contact name |
Diego Cortez |
| E-mail(s) |
diegoclaudio.cortezquezada@unil.ch
|
| Organization name |
Univerity of Lausanne - CIG
|
| Street address |
Rue de Lausanne
|
| City |
Lausanne |
| ZIP/Postal code |
1015 |
| Country |
Switzerland |
| |
|
| Platform ID |
GPL21875 |
| Series (1) |
| GSE97367 |
BioProject PRJNA381064: Convergent origination of a Drosophila-like dosage compensation mechanism in a reptile lineage (Gene expression profiling in several tetrapod species, bulk tissue RNA-seq) |
|
| Relations |
| BioSample |
SAMN06679857 |
| SRA |
SRX2704313 |
