NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Sample GSM2671120 Query DataSets for GSM2671120
Status Public on Jun 23, 2017
Title Non-lesional Skin Biopsy [45583002501_D-1]_1
Sample type RNA
 
Source name Non-lesional Skin Biopsy
Organism Homo sapiens
Characteristics tissue: skin
diagnosis: Discoid Lupus Erythematosus
skin lesion status: Non-lesional
sbj: 45583002501
visit name: D-1
dose: 0 mg
sequence: Placebo on Day 1 followed by AMG811 (D85)
Treatment protocol The study was designed as a phase I randomized, double-blind, placebo-controlled crossover study of the pharmacodynamics, safety, and clinical efficacy of AMG 811 in patients with DLE. Patients received a single subcutaneous dose of AMG 811 (180 mg) or placebo. The patients in sequence 1 received AMG 811 followed by placebo, while those in sequence 2 received placebo followed by AMG 811. 
Extracted molecule total RNA
Extraction protocol Frozen skin samples were disrupted with a Multi-Sample Bio Pulverizer (Research Products International) and homogenized with a TissueRuptor (Qiagen). Total RNA was isolated using the mirVana Micro-RNA Isolation kit (Applied Biosystems), modified to include on-column DNase treatment with RNase-free DNase (Qiagen).
Label biotin
Label protocol Labeled complementary DNA was generated using a NuGEN Ovation kit (NuGen Technologies) according to the manufacturer's instructions.
 
Hybridization protocol Labeled samples were hybridized to GeneChip HT_HG-U133+PM microarrays.
Scan protocol Hybridizaed microarrays were scanned using a GeneTitan instrument (Affymetrix)
Description Sample name: 18
Data processing The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings.
 
Submission date Jun 15, 2017
Last update date Jan 23, 2018
Contact name Dan Baker
E-mail(s) bakerd@amgen.com
Phone 805-447-1000
Organization name Amgen Inc.
Department Molecular Sciences
Street address 1 Amgen Center Drive
City Thousand Oaks
State/province CA
ZIP/Postal code 91320
Country USA
 
Platform ID GPL13158
Series (2)
GSE100093 Pharmacodynamics, Safety, and Clinical Efficacy of AMG 811, a Human Anti-Interferon-γ Antibody, in Patients With Discoid Lupus Erythematosus [skin]
GSE100431 Pharmacodynamics, Safety, and Clinical Efficacy of AMG 811, a Human Anti-Interferon-γ Antibody, in Patients With Discoid Lupus Erythematosus

Data table header descriptions
ID_REF
VALUE log2-transformed intensities

Data table
ID_REF VALUE
1007_PM_s_at 9.79
1053_PM_at 7.80
117_PM_at 6.03
121_PM_at 6.91
1255_PM_g_at 2.84
1294_PM_at 7.65
1316_PM_at 6.56
1320_PM_at 5.13
1405_PM_i_at 4.24
1431_PM_at 6.33
1438_PM_at 5.65
1487_PM_at 7.51
1494_PM_f_at 3.80
1552256_PM_a_at 7.83
1552257_PM_a_at 9.42
1552258_PM_at 4.89
1552261_PM_at 5.20
1552263_PM_at 4.42
1552264_PM_a_at 6.59
1552266_PM_at 4.47

Total number of rows: 54715

Table truncated, full table size 1008 Kbytes.




Supplementary file Size Download File type/resource
GSM2671120_skn81636.CEL.gz 2.2 Mb (ftp)(http) CEL
Processed data included within Sample table

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap