GEO Publications
Handout
NAR 2024 (latest)
NAR 2002 (original)
All publications
FAQ
MIAME
Email GEO
NCBI
>
GEO
>
Accession Display
Not logged in |
Login
GEO help:
Mouse over screen elements for information.
Scope:
Self
Platform
Samples
Series
Family
Format:
HTML
SOFT
MINiML
Amount:
Brief
Quick
GEO accession:
Sample GSM272107
Query DataSets for GSM272107
Status
Public on Oct 02, 2008
Title
Ecotype Col0 RNA sample1
Sample type
RNA
Source name
Foliar tissue from wild type Arabidopsis
Organism
Arabidopsis thaliana
Characteristics
Green Plant
Extracted molecule
total RNA
Extraction protocol
Trizol+Machery nagel Kit
Label
biotin
Label protocol
Affymetrix 1 cycle target
Hybridization protocol
Standard affymetrix
Scan protocol
Standard affymetrix
Description
Each replicate consists of either 10 Avr2-expressing or 10 Col-0 Arabidopsis plants.
Data processing
MAS5.0 algorithm
Submission date
Mar 11, 2008
Last update date
Aug 28, 2018
Contact name
Bart Thomma
E-mail(s)
Bart.thomma@wur.nl
Phone
+31-317-484536
Fax
+31-317 483412
URL
http://www.php.wur.nl/UK/Research/ArabidopsisMolecularPhytopathology/
Organization name
Wageningen University
Department
Plant Sciences
Lab
Phytopathology
Street address
Binnenhaven 5
City
Wageningen
State/province
Gelderland
ZIP/Postal code
6709 PD
Country
Netherlands
Platform ID
GPL198
Series (1)
GSE10801
C. fulvum Avr2
Relations
Reanalyzed by
GSE119083
Data table header descriptions
ID_REF
VALUE
normalized signal intensity
ABS_CALL
Absent or Present Call
DETECTION P-VALUE
detection p-value
Data table
ID_REF
VALUE
ABS_CALL
DETECTION P-VALUE
AFFX-BioB-5_at
123.189
P
0.000224668
AFFX-BioB-M_at
104.654
P
4.42873e-05
AFFX-BioB-3_at
79.4059
P
6.02111e-05
AFFX-BioC-5_at
322.971
P
5.16732e-05
AFFX-BioC-3_at
252.899
P
5.16732e-05
AFFX-BioDn-5_at
622.488
P
4.42873e-05
AFFX-BioDn-3_at
1206.96
P
4.42873e-05
AFFX-CreX-5_at
3595.57
P
4.42873e-05
AFFX-CreX-3_at
3873.94
P
4.42873e-05
AFFX-DapX-5_at
613.241
P
5.16732e-05
AFFX-DapX-M_at
1221.35
P
4.42873e-05
AFFX-DapX-3_at
2274.63
P
4.42873e-05
AFFX-LysX-5_at
130.777
P
4.42873e-05
AFFX-LysX-M_at
164.354
P
4.42873e-05
AFFX-LysX-3_at
421.076
P
5.16732e-05
AFFX-PheX-5_at
149.794
P
4.42873e-05
AFFX-PheX-M_at
156.26
P
5.16732e-05
AFFX-PheX-3_at
378.998
P
5.16732e-05
AFFX-ThrX-5_at
142.235
P
4.42873e-05
AFFX-ThrX-M_at
301.662
P
5.16732e-05
Total number of rows:
22810
Table truncated, full table size
676 Kbytes
.
Supplementary file
Size
Download
File type/resource
GSM272107.CEL.gz
1.9 Mb
(ftp)
(http)
CEL
GSM272107.CHP.gz
125.4 Kb
(ftp)
(http)
CHP
Processed data included within Sample table
|
NLM
|
NIH
|
GEO Help
|
Disclaimer
|
Accessibility
|
