|
| Status |
Public on Jun 26, 2018 |
| Title |
EPN-PFA SAMPLE 200 |
| Sample type |
genomic |
| |
|
| Source name |
brain tumor
|
| Organism |
Homo sapiens |
| Characteristics |
diagnosis: EPN-PFA
Sex: M
age: 2.5
institute: UK
cxorf67mut: wt
os: 83
OS status: 1
pfs: 26
pfs status: 1
|
| Treatment protocol |
Extraction of high molecular weight DNA from frozen tumor samples was carried out by use of a salting-out method or by ultracentrifugation over cesium chloride.
|
| Extracted molecule |
genomic DNA |
| Extraction protocol |
Illumina protocol.
|
| Label |
biotin/DNP
|
| Label protocol |
Illumina protocol.
|
| |
|
| Hybridization protocol |
Illumina protocol.
|
| Scan protocol |
Illumina iScan System according to the manufacturer's protocol
|
| Description |
Methylation data from brain tumor sample.
|
| Data processing |
Bioconductor (Version 3.3) package minifi (Version 1.18) using function 'preprocessIllumina'
|
| |
|
| Submission date |
Sep 25, 2017 |
| Last update date |
Sep 14, 2023 |
| Contact name |
Martin Sill |
| E-mail(s) |
m.sill@dkfz.de
|
| Organization name |
DKFZ
|
| Department |
Division of Pediatric Neurooncology
|
| Street address |
Im Neuenheimer Feld 280
|
| City |
Heidelberg |
| ZIP/Postal code |
69120 |
| Country |
Germany |
| |
|
| Platform ID |
GPL13534 |
| Series (1) |
| GSE104210 |
Clinical and genetic diversity and recurrent CXorf67 mutations across distinct molecular subgroups of posterior fossa type A (PFA) ependymoma. |
|
| Relations |
| Reanalyzed by |
GSE243240 |
