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Sample GSM2829513 Query DataSets for GSM2829513
Status Public on Oct 25, 2017
Title AML 7
Sample type RNA
 
Source name Leukemic blasts
Organism Homo sapiens
Characteristics cell type: Leukemic blasts
disease state: Acute myeloid leukemia
gender: M
age: 84
aml status: de novo
fab: M1
cd34: Pos
cd117: Pos
cytogenetics: Multiple
Extracted molecule total RNA
Extraction protocol RNA isolation was performed according to QIAgen's instructions in the RNeasy with DNase treatment protocol for the QIAcube.
Label biotin
Label protocol Biotinylated cRNA were prepared with the Illumina TotalPrep-96 RNA Amplification Kit from Thermo Fisher Scientific
 
Hybridization protocol Standard Illumina hybridization protocol
Scan protocol Standard Illumina scanning protocol
Data processing Data were quantile-normalised (http://www.molmine.com/magma/loading/illumina.html) using J-Express version 2012 (http://jexpress.bioinfo.no/site/)
 
Submission date Oct 24, 2017
Last update date Oct 25, 2017
Contact name Hakon Reikvam
E-mail(s) Hakon.Reikvam@uib.no
Phone +4755585408
Organization name University of Bergen
Department Department of Clinical Science
Street address Jonas Lies vei 65
City Bergen
ZIP/Postal code 5021
Country Norway
 
Platform ID GPL10558
Series (1)
GSE106096 Disease-stabilizing treatment based on all-trans retinoic acid and valproic acid in acute myeloid leukemia

Data table header descriptions
ID_REF
VALUE Quantile normalized
Detection Pval

Data table
ID_REF VALUE Detection Pval
ILMN_1343048 32488.32553 0
ILMN_1343049 31351.84 0
ILMN_1343050 370.9492149 0
ILMN_1343052 519.5950511 0
ILMN_1343059 101.3070245 0.8233766
ILMN_1343061 2800.17417 0
ILMN_1343062 4770.916383 0
ILMN_1343063 139.8109957 0.007792208
ILMN_1343064 231.0694319 0
ILMN_1343291 27817.02915 0
ILMN_1343295 7870.582447 0
ILMN_1343296 106.3564134 0.6038961
ILMN_1343297 115.2816468 0.2714286
ILMN_1343298 115.824517 0.2519481
ILMN_1343299 116.0524319 0.2428571
ILMN_1343300 107.1973121 0.574026
ILMN_1343301 119.4110064 0.161039
ILMN_1343302 109.2114434 0.4922078
ILMN_1343303 114.207366 0.2987013
ILMN_1343304 104.8345362 0.6571429

Total number of rows: 48107

Table truncated, full table size 1535 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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