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Sample GSM2829535 Query DataSets for GSM2829535
Status Public on Oct 25, 2017
Title AML 42
Sample type RNA
 
Source name Leukemic blasts
Organism Homo sapiens
Characteristics cell type: Leukemic blasts
disease state: Acute myeloid leukemia
gender: M
age: 76
aml status: de novo
fab: M0
cd34: Pos
cd117: Pos
cytogenetics: Normal
Extracted molecule total RNA
Extraction protocol RNA isolation was performed according to QIAgen's instructions in the RNeasy with DNase treatment protocol for the QIAcube.
Label biotin
Label protocol Biotinylated cRNA were prepared with the Illumina TotalPrep-96 RNA Amplification Kit from Thermo Fisher Scientific
 
Hybridization protocol Standard Illumina hybridization protocol
Scan protocol Standard Illumina scanning protocol
Data processing Data were quantile-normalised (http://www.molmine.com/magma/loading/illumina.html) using J-Express version 2012 (http://jexpress.bioinfo.no/site/)
 
Submission date Oct 24, 2017
Last update date Oct 25, 2017
Contact name Hakon Reikvam
E-mail(s) Hakon.Reikvam@uib.no
Phone +4755585408
Organization name University of Bergen
Department Department of Clinical Science
Street address Jonas Lies vei 65
City Bergen
ZIP/Postal code 5021
Country Norway
 
Platform ID GPL10558
Series (1)
GSE106096 Disease-stabilizing treatment based on all-trans retinoic acid and valproic acid in acute myeloid leukemia

Data table header descriptions
ID_REF
VALUE Quantile normalized
Detection Pval

Data table
ID_REF VALUE Detection Pval
ILMN_1343048 25416.61489 0
ILMN_1343049 25289.02787 0
ILMN_1343050 482.8830745 0
ILMN_1343052 605.1405851 0
ILMN_1343059 106.3938162 0.6337662
ILMN_1343061 5169.067723 0
ILMN_1343062 8712.161043 0
ILMN_1343063 165.968234 0.001298701
ILMN_1343064 502.4109787 0
ILMN_1343291 25691.48213 0
ILMN_1343295 3707.792979 0
ILMN_1343296 100.0310443 0.8389611
ILMN_1343297 120.000717 0.1688312
ILMN_1343298 102.1216864 0.7883117
ILMN_1343299 111.7885064 0.4350649
ILMN_1343300 114.2047021 0.3415585
ILMN_1343301 121.8609553 0.1467533
ILMN_1343302 104.5082428 0.7064935
ILMN_1343303 114.5778191 0.3181818
ILMN_1343304 96.36220915 0.9311689

Total number of rows: 48107

Table truncated, full table size 1552 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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