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Sample GSM283150 Query DataSets for GSM283150
Status Public on Jul 15, 2008
Title (V1) cth1cth2 in 100uM BPS replicate 1
Sample type RNA
 
Source name cth1cth2 strain grown in SC-ura with 100uM BPS
Organism Saccharomyces cerevisiae
Characteristics [cth1::kan;cth2::HIS (pRS416)]
Parental BY4741
Extracted molecule total RNA
Extraction protocol Standard glass beads method using acidic phenol:chloroform.
Label Biotin
Label protocol Standard Affymetrix protocol
 
Hybridization protocol Standard Affymetrix protocol
Scan protocol Standard Affymetrix protocol
Description Gene expression data from cth1cth2 deletion strain under iron limitation (using the iron chelator BPS - bathophenanthroline disulfonate)
Data processing MAS5.0 ExpressionStat, GeneSpring 6.1
 
Submission date Apr 22, 2008
Last update date Apr 22, 2008
Contact name Dennis J. Thiele
E-mail(s) dennis.thiele@duke.edu
Phone 919 668-6060
Fax 919-668-6044
URL http://thielelab.duhs.duke.edu/index.html
Organization name Duke University
Department Pharmacology and Cancer Biology
Lab Thiele Lab
Street address 3813 Research Drive
City Durham
State/province NC
ZIP/Postal code 27710
Country USA
 
Platform ID GPL90
Series (1)
GSE11236 Cooperation of two mRNA-binding proteins drives metabolic adaptation to iron deficiency

Data table header descriptions
ID_REF
VALUE SIGNAL INTENSITY
ABS_CALL (P) PRESENT; (A) ABSENT; (M) MARGINAL
DETECTION P-VALUE STATISTICAL SIGNIFICANCE OF A 'PRESENT' CALL

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
AFFX-MurIL2_at 2.91064 A 0.986189
AFFX-MurIL10_at 1.09649 A 0.98333
AFFX-MurIL4_at 1.11311 A 0.984817
AFFX-MurFAS_at 2.93464 A 0.916408
AFFX-BioB-5_at 85.2617 P 0.0012475
AFFX-BioB-M_at 144.238 P 9.4506e-05
AFFX-BioB-3_at 119.344 P 0.00010954
AFFX-BioC-5_at 245.627 P 6.02111e-05
AFFX-BioC-3_at 257.693 P 4.42873e-05
AFFX-BioDn-5_at 418.327 P 6.02111e-05
AFFX-BioDn-3_at 1276.62 P 5.16732e-05
AFFX-CreX-5_at 1563.25 P 4.42873e-05
AFFX-CreX-3_at 2844.45 P 5.16732e-05
AFFX-BioB-5_st 0.689121 A 0.904333
AFFX-BioB-M_st 7.29606 A 0.686277
AFFX-BioB-3_st 4.22024 A 0.834139
AFFX-BioC-5_st 4.65765 A 0.724854
AFFX-BioC-3_st 0.621444 A 0.860518
AFFX-BioDn-5_st 6.04611 A 0.470241
AFFX-BioDn-3_st 32.6155 M 0.050229

Total number of rows: 9335

Table truncated, full table size 270 Kbytes.




Supplementary file Size Download File type/resource
GSM283150.CEL.gz 2.0 Mb (ftp)(http) CEL
GSM283150.CHP.gz 51.3 Kb (ftp)(http) CHP
Processed data included within Sample table
Processed data provided as supplementary file

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