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Sample GSM283153 Query DataSets for GSM283153
Status Public on Jul 15, 2008
Title (C1) CTH1cth2 in 100uM BPS replicate 1
Sample type RNA
 
Source name CTH1cth2 strain grown in SC-ura with 100uM BPS
Organism Saccharomyces cerevisiae
Characteristics [cth1::kan;cth2::HIS (pRS416-CTH1)]
BY4741 parental
Extracted molecule total RNA
Extraction protocol Standard glass beads method using acidic phenol:chloroform.
Label Biotin
Label protocol Standard Affymetrix protocol
 
Hybridization protocol Standard Affymetrix protocol
Scan protocol Standard Affymetrix protocol
Description Gene expression data from CTH1cth2 strain under iron limitation (using the iron chelator BPS - bathophenanthroline disulfonate)
Data processing MAS5.0 ExpressionStat, GeneSpring 6.1
 
Submission date Apr 22, 2008
Last update date Apr 22, 2008
Contact name Dennis J. Thiele
E-mail(s) dennis.thiele@duke.edu
Phone 919 668-6060
Fax 919-668-6044
URL http://thielelab.duhs.duke.edu/index.html
Organization name Duke University
Department Pharmacology and Cancer Biology
Lab Thiele Lab
Street address 3813 Research Drive
City Durham
State/province NC
ZIP/Postal code 27710
Country USA
 
Platform ID GPL90
Series (1)
GSE11236 Cooperation of two mRNA-binding proteins drives metabolic adaptation to iron deficiency

Data table header descriptions
ID_REF
VALUE SIGNAL INTENSITY
ABS_CALL (P) PRESENT; (A) ABSENT; (M) MARGINAL
DETECTION P-VALUE STATISTICAL SIGNIFICANCE OF A 'PRESENT' CALL

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
AFFX-MurIL2_at 25.7737 A 0.672921
AFFX-MurIL10_at 1.62524 A 0.957038
AFFX-MurIL4_at 1.56931 A 0.9273
AFFX-MurFAS_at 10.7886 A 0.672921
AFFX-BioB-5_at 121.085 P 0.0044838
AFFX-BioB-M_at 166.244 P 0.000340305
AFFX-BioB-3_at 175.54 P 0.000258358
AFFX-BioC-5_at 301.05 P 7.00668e-05
AFFX-BioC-3_at 316.538 P 4.42873e-05
AFFX-BioDn-5_at 592.459 P 4.42873e-05
AFFX-BioDn-3_at 1805.96 P 4.42873e-05
AFFX-CreX-5_at 2498.34 P 4.42873e-05
AFFX-CreX-3_at 3793.4 P 4.42873e-05
AFFX-BioB-5_st 17.5031 A 0.250796
AFFX-BioB-M_st 2.38838 A 0.963431
AFFX-BioB-3_st 1.49429 A 0.966323
AFFX-BioC-5_st 8.97726 A 0.852061
AFFX-BioC-3_st 11.0531 A 0.455413
AFFX-BioDn-5_st 18.5701 A 0.39692
AFFX-BioDn-3_st 52.6321 P 0.00844047

Total number of rows: 9335

Table truncated, full table size 270 Kbytes.




Supplementary file Size Download File type/resource
GSM283153.CEL.gz 1.9 Mb (ftp)(http) CEL
GSM283153.CHP.gz 51.6 Kb (ftp)(http) CHP
Processed data included within Sample table
Processed data provided as supplementary file

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