|
| Status |
Public on Nov 14, 2020 |
| Title |
43-aminoacid-exposure-1000-M5h-whole-nose-larvae |
| Sample type |
SRA |
| |
|
| Source name |
premetamorphosis
|
| Organism |
Xenopus laevis |
| Characteristics |
tissue: nose
|
| Extracted molecule |
total RNA |
| Extraction protocol |
none provided by the submitter
|
| |
|
| Library strategy |
RNA-Seq |
| Library source |
transcriptomic |
| Library selection |
cDNA |
| Instrument model |
Illumina HiSeq 4000 |
| |
|
| Description |
43-aminoacid-exposure-1000-M5h-whole-nose-larvae
|
| Data processing |
Basecall was performed using bcl2fastq v2.17.1.14
Sequenced reads were aligned to reference genome Xenopus laevis using STAR aligner version 2.5
Raw counts were calculated using featureCounts from subread package version 1.5.0
Transcripts Per Million (TPM) were calculated as proposed by Wagner et al 2012.
Genome_build: 9.1
Supplementary_files_format_and_content: tab-delimited text files including TPM for each Sample; normalised text file and raw data txt files
|
| |
|
| Submission date |
Nov 14, 2017 |
| Last update date |
Nov 14, 2020 |
| Contact name |
Carsten Lueder |
| E-mail(s) |
clueder@gwdg.de
|
| Organization name |
Institut für Medizinische Mikrobiologie
|
| Street address |
Kreuzbergring 57
|
| City |
Göttingen |
| ZIP/Postal code |
37075 |
| Country |
Germany |
| |
|
| Platform ID |
GPL22393 |
| Series (1) |
| GSE106877 |
Changes in the gene expression in the olfactory organ of Xenopus laevis |
|
| Relations |
| BioSample |
SAMN08025235 |
| SRA |
SRX3390680 |
